Locus 6256

Sequence ID 3R_DroMel_CAF1
Location 16,314,545 – 16,314,644
Length 99
Max. P 0.904545
window10204

overview

Window 4

Location 16,314,545 – 16,314,644
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.08
Mean single sequence MFE -34.28
Consensus MFE -30.82
Energy contribution -30.26
Covariance contribution -0.56
Combinations/Pair 1.13
Mean z-score -1.48
Structure conservation index 0.90
SVM decision value 1.04
SVM RNA-class probability 0.904545
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16314545 99 - 27905053
UAUGGUGGACCCACUGUGAAAGCAAUGACGGAUAUUGCAAACGGAGGACUGCUCCCUGUCCGUGUCCGGGAAUCGUUUUCGGU-UGCGGACUAAGCAGAG
(((((((....)))))))...((((((.....))))))..........(((((....(((((((.(((..(.....)..))).-)))))))..))))).. ( -34.30)
>DroSec_CAF1 12371 99 - 1
UAUAGUGGACCCACUGUGAAAGCAAUGACGGAUAUUGCAAACGGAGGACUGCUCCCUGUCCGUGUCCGGGAAUCGUUUUCGGU-UGCGGACUAAGCAGAG
(((((((....)))))))...((((((.....))))))..........(((((....(((((((.(((..(.....)..))).-)))))))..))))).. ( -35.60)
>DroSim_CAF1 17570 99 - 1
UAUAGUGGACCCACUGUGAAAGCAAUGACGGAUAUUGCAAACGGAGGACUGCUCCCUGUCCGUGUCCGGGAAUCGUUUUCGGU-UGCGGACUAAGCAGAG
(((((((....)))))))...((((((.....))))))..........(((((....(((((((.(((..(.....)..))).-)))))))..))))).. ( -35.60)
>DroEre_CAF1 15595 99 - 1
UGUAGUGGACCCACUGUGGAAGCAAUGACGGAUAUUGCAAACGGAGGACUGUUCCCUGUCCGUGUCCGGGAAUCGUUUUUGGU-UGCGGACUGAGCAGAG
..........((.((((....((((((.....))))))..)))).)).((((((...(((((((.((((((.....)))))).-))))))).)))))).. ( -32.50)
>DroYak_CAF1 27054 100 - 1
UGUAGUGGACCCACUGUGAAAGCAAUGACUGAUAUUGCAAACGGAGGACUGGUCCCUGUCCGUGUCCGGGAAUCGUUUUUGGUUUGCGGACUAAGCAGAG
......(((((..((.((...((((((.....))))))...)).))....)))))((((....(((((.((((((....)))))).)))))...)))).. ( -33.40)
>consensus
UAUAGUGGACCCACUGUGAAAGCAAUGACGGAUAUUGCAAACGGAGGACUGCUCCCUGUCCGUGUCCGGGAAUCGUUUUCGGU_UGCGGACUAAGCAGAG
(((((((....)))))))...((((((.....))))))..........(((((....((((((..((((((.....))))))...))))))..))))).. (-30.82 = -30.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:52 2006