Locus 6255

Sequence ID 3R_DroMel_CAF1
Location 16,313,674 – 16,313,774
Length 100
Max. P 0.726049
window10203

overview

Window 3

Location 16,313,674 – 16,313,774
Length 100
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 82.97
Mean single sequence MFE -35.96
Consensus MFE -21.88
Energy contribution -21.48
Covariance contribution -0.40
Combinations/Pair 1.20
Mean z-score -2.12
Structure conservation index 0.61
SVM decision value 0.41
SVM RNA-class probability 0.726049
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16313674 100 + 27905053
UCAGAUGUCAGGGGAUUGGGGAUUGGGGAUCGG-------AAACGGGGAACAGGUAACUGGGAACCUGACCAAAACUGUCCGCAUAAC--UGGCGAAGCUCUGACGUUG
...((((((((((..(((((...((.((((((.-------...))((...(((((........))))).))......)))).))...)--)..)))..)))))))))). ( -33.50)
>DroSec_CAF1 11501 100 + 1
UCAGAUGUCAGGGGAUUGGGGAUGGUGGAUCGG-------AAACGGGGAACAGGGAACUGGGAACCUGACCAAAACUGUCCGCAUAAC--UGGCGAAGCUCUGACGUUG
...((((((((((...((.(((((((((.(((.-------...)(((...(((....)))....)))))))...))))))).))...(--(.....)))))))))))). ( -35.10)
>DroSim_CAF1 16700 100 + 1
UCAGAUGUCAGGGGAUUGGGGAUGGUGGAUCGG-------AAACGGGGAACAGGGAACUGGGAACCUGACCAAAACUGUCCGCAUAAC--UGGCGAAGCUCUGACGUUG
...((((((((((...((.(((((((((.(((.-------...)(((...(((....)))....)))))))...))))))).))...(--(.....)))))))))))). ( -35.10)
>DroEre_CAF1 14698 107 + 1
UCAGAUGUGAGAGGAUUGGGGAUCGGGAACAGAGAACAGGGAACUGGGAUCUGGGAACCGGGAACCGGACCAAAACUGUCCGCAUAAC--UGGCGAAGCUCUGACGUUG
...(((((.((((..(((((..((((...((((...(((....)))...))))....))))...))((((.......)))).......--...)))..)))).))))). ( -35.90)
>DroYak_CAF1 25585 109 + 1
UCAGAUGUCAGGUGGUGGGGGAUUGGAUCUGGGGAACAGAGAACGGGGAGCUGGGAACUGAGAACCGGACCAAAAUUGUCCGCAUGACGUUCUCUCAGCUCUGACGUUG
...(((((((((.(.(((((((((((.(((((....(((....(((....)))....)))....)))))))))....(((.....)))..))))))).)))))))))). ( -40.20)
>consensus
UCAGAUGUCAGGGGAUUGGGGAUGGGGGAUCGG_______AAACGGGGAACAGGGAACUGGGAACCUGACCAAAACUGUCCGCAUAAC__UGGCGAAGCUCUGACGUUG
...((((((((((......(((..(....(((...........)))((..((((..........)))).))....)..)))((.........))....)))))))))). (-21.88 = -21.48 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:51 2006