Locus 6254

Sequence ID 3R_DroMel_CAF1
Location 16,310,925 – 16,311,036
Length 111
Max. P 0.844772
window10202

overview

Window 2

Location 16,310,925 – 16,311,036
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -49.68
Consensus MFE -33.33
Energy contribution -34.67
Covariance contribution 1.34
Combinations/Pair 1.14
Mean z-score -1.78
Structure conservation index 0.67
SVM decision value 0.76
SVM RNA-class probability 0.844772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16310925 111 - 27905053
GCAGCCCCGAGCGUCGCAUUCCGGCGUAGUACGGAGCAGUCCGUGGCAAUCCGU-CGCAGUCCGG-CCGGACUGGAU-GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((..((.....))..(((((.(((((((((((....))))).((....(((-(.((((((..-..)))))))))-)((....))..)).)))))).)))))...))))).. ( -53.70)
>DroSec_CAF1 8780 111 - 1
GCAGCCCCGAGCGUCGCAUUCCGGCGUAGUGCGGAGCAGUCCGUGGCAAUCCGU-CGUAGUCCGG-CCGGACUGGAU-GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((..((.....))..(((((.(((((((((..((.((.....))..(((((-((((((((..-..)))))..))-)))))).)).))).)))))).)))))...))))).. ( -53.00)
>DroSim_CAF1 13982 111 - 1
GCAGCCCCGAGCGUCGCAUUCCGGCGUAGUACGGAGCAGUCCGUGGCAAUCCGU-CGCAGUCCGG-CCGGACUGGAU-GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((..((.....))..(((((.(((((((((((....))))).((....(((-(.((((((..-..)))))))))-)((....))..)).)))))).)))))...))))).. ( -53.70)
>DroEre_CAF1 11957 101 - 1
GCAGCCCCGGGCGCCGCAUUCCGGCGUAGUCCGUCGCAGUUUGGA-----------GCAGUCCGG-CCGGACUGGAU-GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((..(((...)))..(((((.(((((((((((.((((((((.-----------.(.....).-)))))))))))-)((....))....))))))).)))))...))))).. ( -49.40)
>DroYak_CAF1 22980 102 - 1
GCAGCCCCGAGCGCCGCAUUCCGGCGUAGUCCCUCGCAGUCCGUU-----------GCAAUCCGGACUGGACGGGAU-GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((.....((...)).(((((.(((((((((((.(((((((..-----------......))))))))).))(..-.((....))...)))))))).)))))...))))).. ( -49.20)
>DroAna_CAF1 8929 103 - 1
GGC------AUUUUCCCAUUUCCCCGGA----GGGGCAUGCCGCCGCAUUCCACACAGAGUCCGG-CCGGACUUUUCGAGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((------(.(((((.....((((...----))))...((((.(((.........(((((((..-..)))))))....((....))..)))....))))))))).)))).... ( -39.10)
>consensus
GCAGCCCCGAGCGUCGCAUUCCGGCGUAGUACGGAGCAGUCCGUGGCAAUCCGU_CGCAGUCCGG_CCGGACUGGAU_GGCGGAAGCACGCGACUACGGCGGAAAUUGCUGCAC
(((((..((.....))..(((((.((((((.....((....................(((((((...))))))).....((....))..)).)))))).)))))...))))).. (-33.33 = -34.67 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:50 2006