Locus 6253

Sequence ID 3R_DroMel_CAF1
Location 16,307,716 – 16,307,810
Length 94
Max. P 0.577288
window10201

overview

Window 1

Location 16,307,716 – 16,307,810
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -17.08
Consensus MFE -7.98
Energy contribution -7.87
Covariance contribution -0.11
Combinations/Pair 1.18
Mean z-score -2.04
Structure conservation index 0.47
SVM decision value 0.09
SVM RNA-class probability 0.577288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16307716 94 - 27905053
GCCCCCUUCUUGGCUGGCUGCUAAUUUUUCUUUUCU---GCUGCUUUCUGCCUGAUACUCGAGUAUUAGUGUAGCUGUAAUUAUGCUCUAAUUAUAU
(((........))).(((.((...............---)).)))..(((((((((((....))))))).)))).((((((((.....)))))))). ( -19.96)
>DroVir_CAF1 42845 85 - 1
UUCC-CUU-----CUGGCAGCUAAUUCC--UUUUCU---GCCACUCU-UUCUUGAUACUCGAGUAUUAGUGGGCCCAUAAUUAUGCUCUAAUUAUAU
..((-(..-----.((((((..((....--))..))---))))....-...(((((((....))))))).)))...(((((((.....))))))).. ( -16.90)
>DroPse_CAF1 39314 97 - 1
GCUCUCUUUUUCUCAGACUGCUAAUUUUUCUUUUCUCCUGCUGCCUUCUGCCUGAUACUCGAGUAUUAGUCGAGCUGUAAUUAUGCUCUAAUUAUAC
((((.........((((..((.....................))..)))).(((((((....)))))))..))))((((((((.....)))))))). ( -18.10)
>DroMoj_CAF1 23607 85 - 1
UUCC-CCU-----CCGGCAGCUAAUUCU--UUUUCU---GCUACUCU-UACUUGAUACUCGAGUAUUAGUCGAGCCGUAAUUAUGCUCUAAUUAUAU
....-...-----..((((((.......--......---)))(((..-((((((.....))))))..)))...)))(((((((.....))))))).. ( -16.82)
>DroAna_CAF1 5192 94 - 1
ACAUUCUUCUUUACCUGCUGCUAAUUUUUCUUUUCU---CUUGCUUUUGGCCUGAUACUCGAGUAUUAGUCGAGCUGUAAUUAUGCUCUAAUUAUAU
................((((((((............---.......)))))(((((((....)))))))...)))((((((((.....)))))))). ( -13.61)
>DroPer_CAF1 39632 97 - 1
GCUCUCUUUUUCUCAGACUGCUAAUUUUUCUUUUCUCCUGCUGCCUCCUGCCUGAUACUCGAGUAUUAGUCGGGCUGUAAUUAUGCUCUAAUUAUAC
((..(((.......)))..)).........................((((.(((((((....))))))).)))).((((((((.....)))))))). ( -17.10)
>consensus
GCCCUCUU_UU__CAGGCUGCUAAUUUUUCUUUUCU___GCUGCUUUCUGCCUGAUACUCGAGUAUUAGUCGAGCUGUAAUUAUGCUCUAAUUAUAU
...................................................(((((((....)))))))..((((.........))))......... ( -7.98 =  -7.87 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:49 2006