Locus 6250

Sequence ID 3R_DroMel_CAF1
Location 16,305,367 – 16,305,467
Length 100
Max. P 0.940626
window10196

overview

Window 6

Location 16,305,367 – 16,305,467
Length 100
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 85.23
Mean single sequence MFE -18.27
Consensus MFE -16.51
Energy contribution -16.83
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.90
SVM decision value 1.29
SVM RNA-class probability 0.940626
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16305367 100 + 27905053
GAUGCAGCCCUCAAAAAUUACUCGUAUUUUCGGUGCUGUAUUUUUAGUACAAC----CAACCAACAUAACAACCAACCAACUGGGCUAACAAUAAUAGCAACGC
((((((((((...(((((.......))))).)).))))))))...........----...............(((......)))((((.......))))..... ( -16.40)
>DroSec_CAF1 3018 104 + 1
GAUGCAGCCCUCAAAAAUUACUCGUAUUUUCGGUGCUGUAUUUUUAGUACAACAAACCAACCAACCAAUCUAACAACCAACUGGGCUAACAAUAAUAGCAACGC
..((((((((............((......))((((((......))))))................................)))))..........))).... ( -15.50)
>DroEre_CAF1 6148 84 + 1
GUUGCAGCCCUCAAAAAUUACUCGUAUUUUCGGUGCUGUAUUUUUAGUACAAC----C----------------AACCAACUGGGCUAACAAUAAUAGCAACGC
((((((((((............((......))((((((......))))))...----.----------------........)))))..........))))).. ( -19.70)
>DroYak_CAF1 14959 84 + 1
GUUGCAGCCCUCAAAAAUUACUCGUAUUUUCGGUGUUGUAUUUUUAGUACAAC----C----------------AACCAACUGGGCUAACAAUAAUAGCAACGC
((((((((((...(((((.......))))).((((((((((.....)))))))----.----------------.)))....)))))..........))))).. ( -21.50)
>consensus
GAUGCAGCCCUCAAAAAUUACUCGUAUUUUCGGUGCUGUAUUUUUAGUACAAC____C________________AACCAACUGGGCUAACAAUAAUAGCAACGC
((((((((((............((......))((((((......))))))................................)))))..........))))).. (-16.51 = -16.83 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:44 2006