Locus 6248

Sequence ID 3R_DroMel_CAF1
Location 16,298,526 – 16,298,646
Length 120
Max. P 0.920230
window10193

overview

Window 3

Location 16,298,526 – 16,298,646
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -32.27
Consensus MFE -31.07
Energy contribution -31.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.96
SVM decision value 1.13
SVM RNA-class probability 0.920230
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16298526 120 + 27905053
AAAUACAAAAUAUAAAACAAUCGCGUUUAGUUUCGUCUGAUUGCGAGCUGACGAGGAUGCAACAUGCUUGAAAUUCCGAGAGCGUUGCUCACGUCCCUUUUCGCUUUUAUUAGUGUAUAU
..(((((....(((((((..(((((.((((......)))).)))))...((((..((.(((((...((((......))))...))))))).)))).......).))))))...))))).. ( -30.80)
>DroSec_CAF1 19735 120 + 1
AAAUACAAAAUAUAAAACAAUCGCGUUUAGUUUCGUCUGAUUGCGAGCUGACGAGGAUGCAACAUGCUUGAAAUUCCGAGAGCGUUGCUCACGUCCUUUUUCGCUUUUAUUAGUGUAUAU
..(((((....((((((...(((((.((((......)))).)))))((.((.(((((((((((...((((......))))...)))))....)))))).)).))))))))...))))).. ( -32.80)
>DroSim_CAF1 11906 119 + 1
AAAUACAAAAUAUAAAACAAUCGCGUUUAGUUUCGUCUGAUUGCGAGCUGACGAGGAUGCAACAUGCUUGAAAUU-CGAGAGCGUUGCUCACGUCCUUUUUCGCUUUUAUUAGUGUAUAU
..(((((....((((((...(((((.((((......)))).)))))((.((.(((((((((((...((((.....-))))...)))))....)))))).)).))))))))...))))).. ( -33.20)
>consensus
AAAUACAAAAUAUAAAACAAUCGCGUUUAGUUUCGUCUGAUUGCGAGCUGACGAGGAUGCAACAUGCUUGAAAUUCCGAGAGCGUUGCUCACGUCCUUUUUCGCUUUUAUUAGUGUAUAU
..(((((....((((((...(((((.((((......)))).)))))((.((.(((((((((((...((((......))))...)))))....)))))).)).))))))))...))))).. (-31.07 = -31.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:41 2006