Locus 6247

Sequence ID 3R_DroMel_CAF1
Location 16,297,747 – 16,297,866
Length 119
Max. P 0.681597
window10192

overview

Window 2

Location 16,297,747 – 16,297,866
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -31.53
Consensus MFE -28.41
Energy contribution -28.63
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.90
SVM decision value 0.31
SVM RNA-class probability 0.681597
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16297747 119 - 27905053
GCCAAAAGGGUUGAGAAUCAGCAACGAGUGUCAAGUGUUAUUGACGAUUUGUUGAUGAUGUGGCACAAAGAGUGGGUAAAAAAGGUAUGCGAUUGGAAUUCGUGAAAGGGUUCUUUGCC-
((((............((((.(((((((((((((......))))).)))))))).)))).))))........................((((..(((((((......))))))))))).- ( -30.22)
>DroSec_CAF1 18685 120 - 1
GCCAAAAGGGUCGAGAAUCAGCAACGAGUGUCAAGUGUUAUUGACGAUUUGUUGAUGAUGUGGCACAAAGAGUGGGUAAAAAAGGUAUGCGAUUGGAAUUCGUGAAAGGGUUGUUUGCCC
.((....))((((...((((.(((((((((((((......))))).)))))))).)))).)))).........(((((((........((((.......))))..........))))))) ( -31.87)
>DroSim_CAF1 10846 120 - 1
GCCAAAAGGGUUGAGAAUCGGCAACGAGUGUCAAGUGUUAUUGACGAUUUGUUGAUGAUGUGGCACAAAGAGUGGGUAAAAAAGGUAUGCGAUUGGAAUUCGUGAAAGGGUUCUAUGCCA
(((..............(((....)))((((((...(((((..((.....))..))))).))))))........)))......(((((......(((((((......)))))))))))). ( -32.50)
>consensus
GCCAAAAGGGUUGAGAAUCAGCAACGAGUGUCAAGUGUUAUUGACGAUUUGUUGAUGAUGUGGCACAAAGAGUGGGUAAAAAAGGUAUGCGAUUGGAAUUCGUGAAAGGGUUCUUUGCC_
.(((....(((((...((((.(((((((((((((......))))).)))))))).)))).)))).)......))).............((((..(((((((......))))))))))).. (-28.41 = -28.63 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:40 2006