Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,296,364 – 16,296,484 |
Length | 120 |
Max. P | 0.808077 |
Location | 16,296,364 – 16,296,484 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -23.27 |
Energy contribution | -23.93 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.86 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16296364 120 - 27905053 CCAAGUGACAACGCCGCCGGCGACAGCGUACAUUCGCGUUCACUUACAGAAAGCUGAGCAGCGAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA ....((((.....((((((((....))((...(((((((((((((.....))).))))).)))))...))....................)))))).......))))............. ( -30.60) >DroSec_CAF1 17028 120 - 1 CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGAAUAAAAUUCACAAAUAAAUGCAAA ....((((...((((...))))....(((.((((.((((((.......))))))......((......))..................)))))))........))))............. ( -23.30) >DroSim_CAF1 9187 120 - 1 CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA ....((((.....((((((((....))((.((((.((((((((((.....))).)))).)))..))))))....................)))))).......))))............. ( -27.10) >consensus CCAAGUGACAACGCCGCCGGCGACAGCGCACAUUCGCUUUCACUUACAGAAAGCUGAGCAGCAAAAUGGCAAAAAAUAAUAAUCAUAAAAUGGCGGAUAAAAUUCACAAAUAAAUGCGAA ....((((.....((((((((((.((((......)))).)).....(((....))).)).((......))....................)))))).......))))............. (-23.27 = -23.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:35 2006