Locus 6244

Sequence ID 3R_DroMel_CAF1
Location 16,296,023 – 16,296,143
Length 120
Max. P 0.631372
window10186

overview

Window 6

Location 16,296,023 – 16,296,143
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -38.43
Consensus MFE -35.83
Energy contribution -35.50
Covariance contribution -0.33
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.93
SVM decision value 0.20
SVM RNA-class probability 0.631372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16296023 120 + 27905053
UUUUGCCAUCUUUCGGCUCAUGCCUGUUGUCUUUGCCAUGAUGUCGCACAUUCUGAGCCUCAUCCUUUUGGCAUUUCGCCUGGGGUGUUCCGUUUGGUAAAUCGGGAAAUUGGUGGCUCG
....((((((....(((((((((....((((........))))..))).....)))))).((((((...(((.....))).))))))(((((.((....)).)))))....))))))... ( -37.70)
>DroSec_CAF1 16675 120 + 1
UUUUGCCAUCUUUCGGCUCAUGCCUGUUGUCUUUUCCAUGAUGUCGCACAUUUCGGGCCUCAUCCUUUUGGCAUUUCGCCUGGGGUGUUCCGUUCGGAAAAUCGGGAAAUUGGUGGCUCG
....((((((....(((....)))........(((((.((((.....((((..(((((...((((....)).))...)))))..))))(((....)))..)))))))))..))))))... ( -39.60)
>DroSim_CAF1 8843 120 + 1
UUUUGCCAUCUUUCGGCUCAUGCCUGUUGUCUUUGCCAUGAUGUCGCACAUUUUGGGCCUCAUCCUUUUGGCAUUUCGCCUGGGGUGUUCCGUUCGGAAAAUCGGGAAAUUGGUGGCUCG
....(((((((((((((....)))...........(((.((((.....)))).))).((.((((((...(((.....))).))))))((((....))))....))))))..))))))... ( -38.00)
>consensus
UUUUGCCAUCUUUCGGCUCAUGCCUGUUGUCUUUGCCAUGAUGUCGCACAUUUUGGGCCUCAUCCUUUUGGCAUUUCGCCUGGGGUGUUCCGUUCGGAAAAUCGGGAAAUUGGUGGCUCG
....(((((((((((((....))).......((((((..((((.....))))..((((..((((((...(((.....))).))))))....))))))))))....))))..))))))... (-35.83 = -35.50 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:34 2006