| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,294,697 – 16,294,817 |
| Length | 120 |
| Max. P | 0.643801 |
| Location | 16,294,697 – 16,294,817 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -32.53 |
| Consensus MFE | -30.10 |
| Energy contribution | -30.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16294697 120 - 27905053 AGCUUGUCUGCAAUUAUGCAAAAUAAAUAAAUUAGAAAUCCGUCGACAUGGAAGCAUUAUUGCACUCGAGUGCGACGAGUUCGUGUGCGGCGCUCGAGUAAGCAAACUAUAGACUUAAUC .((((....(((((.((((..(((......))).....(((((....))))).)))).)))))((((((((((.(((....))).....))))))))))))))................. ( -34.40) >DroSec_CAF1 15383 120 - 1 AGCUUGUCUGCAAUUAUGCAAAAUAAAUAAAUUAGAAAUCCGUCGACGUGGCAGCAUUAUUGCACUCGAGUGCGACGAAUUUGUGUGCGGCGCUCGAGUAAACAAACUAUAGACUUAAUC .....(((((((((.((((...............(.....)(((.....))).)))).)))))((((((((((((((......))).).))))))))))...........))))...... ( -31.40) >DroSim_CAF1 7521 120 - 1 AGCUUGUCUGCAAUUAUGCAAAAUAAAUAAAUUAGAAAUCCGUCGACGUGGCAGCAUUAUUGCACUCGAGUGCGACGAGUUUGUGUGCGGCGCUCGAGUAAGCAAACUAUAGACUUAAUC .((((....(((((.((((...............(.....)(((.....))).)))).)))))((((((((((((((......))).).))))))))))))))................. ( -31.80) >consensus AGCUUGUCUGCAAUUAUGCAAAAUAAAUAAAUUAGAAAUCCGUCGACGUGGCAGCAUUAUUGCACUCGAGUGCGACGAGUUUGUGUGCGGCGCUCGAGUAAGCAAACUAUAGACUUAAUC .....(((((((((.((((..(((......)))......(((......)))..)))).)))))((((((((((((((......))).).))))))))))...........))))...... (-30.10 = -30.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:33 2006