| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,293,764 – 16,293,880 |
| Length | 116 |
| Max. P | 0.834386 |
| Location | 16,293,764 – 16,293,880 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.72 |
| Mean single sequence MFE | -41.33 |
| Consensus MFE | -40.13 |
| Energy contribution | -40.13 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16293764 116 + 27905053 ----ACCGACAUUGGCCACGGCCAAGGACUGAACCUGGUACUCCACUUCGGUCACAUCUCAGCCAUCAGGCGACCAGGUUCCUCCCACUCACGUCCCGUCGACCCACGACCCGAAUAGGG ----..((((.(((((....)))))(((..(((((((((.....((....)).........(((....))).))))))))).)))............))))........(((.....))) ( -41.10) >DroSec_CAF1 14429 120 + 1 UAGCACCGACAUUGGCCACGGCCAAGGACUGAACCUGGUGCUCCGCGUCGGUCACAUCUCAGCCAUCAGGCGACCAGGUUCCUCCCACUCACGUCCCGUCGGCCCACGACUCGAAUAGGG .....(((((.(((((....)))))(((..(((((((((...(((...)))..........(((....))).))))))))).))).......)))..((((.....)))).......)). ( -41.80) >DroSim_CAF1 6548 120 + 1 UAGCACCGACAUUGGCCACGGCCAAGGACUGAACCUGGUUCUCCGCGUCGGUCACAUCUCAGCCAUCAGGCGACCAGGUUCCUCCCACUCACGUCCCGUCGACCCACGACUCGAAUAGGG .....(((((.(((((....)))))(((..((((((((((..(((...)))..........(((....))))))))))))).))).......)))..((((.....)))).......)). ( -41.10) >consensus UAGCACCGACAUUGGCCACGGCCAAGGACUGAACCUGGUACUCCGCGUCGGUCACAUCUCAGCCAUCAGGCGACCAGGUUCCUCCCACUCACGUCCCGUCGACCCACGACUCGAAUAGGG .....(((((.(((((....)))))(((..(((((((((...((.....))..........(((....))).))))))))).))).......)))..((((.....)))).......)). (-40.13 = -40.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:32 2006