Locus 6241

Sequence ID 3R_DroMel_CAF1
Location 16,293,408 – 16,293,528
Length 120
Max. P 0.773243
window10183

overview

Window 3

Location 16,293,408 – 16,293,528
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -32.30
Consensus MFE -30.95
Energy contribution -30.73
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.83
Structure conservation index 0.96
SVM decision value 0.54
SVM RNA-class probability 0.773243
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16293408 120 - 27905053
UUUCCCGGCCAUAGUAAUUAGAUUUAGCUUUUAUUCAAUUCAGAUUGAACGAGUGAGUGCACAGAAUGCAUCGCACACGCGAGCCGAUAUCAAUUAUAUUUUGGCCGGCAACUAAAUGGC
....(((((((..((((((.((((..(((((..((((((....))))))..)(((.((((............)))).)))))))..).)))))))))....)))))))............ ( -33.30)
>DroSec_CAF1 14088 120 - 1
UUUCCCGGCCAUAGUAAUUAGAUUUAGCUUUUAUUCAAUUCAGAUUGAACGAGUGAGUGCACAGAAUCCAUCGCACAAGCGAGCCGAUAUCAAUUAUAUUUUGGCCGGCAACUAAAUGGC
....(((((((..((((((.(((...((.(((((((..(((.....))).))))))).)).....(((..((((....))))...))))))))))))....)))))))............ ( -31.50)
>DroSim_CAF1 6188 120 - 1
UUUCCCGGCCGUAGUAAUUAGAUUUAGCUUUUAUUCAAUUCAGAUUGAACGAGUGAGUGCACAGAAUCCAGCGCACAAGCGAGCCGAUAUCAAUUAUAUUUUGGCCGGCAACUAAAUGGC
....(((((((..((((((.((((..(((((..((((((....))))))..)((..((((.(........).))))..))))))..).)))))))))....)))))))............ ( -32.10)
>consensus
UUUCCCGGCCAUAGUAAUUAGAUUUAGCUUUUAUUCAAUUCAGAUUGAACGAGUGAGUGCACAGAAUCCAUCGCACAAGCGAGCCGAUAUCAAUUAUAUUUUGGCCGGCAACUAAAUGGC
....(((((((..((((((.((((..(((((..((((((....))))))..)((..((((............))))..))))))..).)))))))))....)))))))............ (-30.95 = -30.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:31 2006