Locus 6240

Sequence ID 3R_DroMel_CAF1
Location 16,293,048 – 16,293,168
Length 120
Max. P 0.835846
window10182

overview

Window 2

Location 16,293,048 – 16,293,168
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -27.27
Consensus MFE -27.29
Energy contribution -27.40
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.78
Structure conservation index 1.00
SVM decision value 0.73
SVM RNA-class probability 0.835846
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16293048 120 - 27905053
AUUAAAUGCACUCUGAUUGGCAACUAAUUAGAUUUCCUUGCUAUUCGAUUCAAAUCAGUCGAAUGACUGCACAGAAUCCAUCGCAUAUGCUCACUCAUUUGAUUUGGGCGGAAACUAAAU
...........((((((((....).)))))))(((((.(((.((..(((((....(((((....)))))....))))).)).)))...(((((.((....))..))))))))))...... ( -28.90)
>DroSec_CAF1 13729 120 - 1
AUUAAAUGCACUCUGAUUGGCAACUAAUUAGAUUUCCUUGCUAUUCGAUUCAAAUCAGUCGAAUGACUGCACAGAAUCCAUCGCGUAUGCUCACUCAUUUGAUUUGGGCGGAAACUAAAU
.....((((..((((((((....).))))))).(((..((((((((((((......)))))))))...)))..)))......))))..(((((.((....))..)))))(....)..... ( -28.40)
>DroSim_CAF1 5837 120 - 1
AUUAAAUGCACUCUGAUUGGCAACUAAUUAGAUUUCCUUGCUAUUCGAUUCAAAUCAGCCGAAUGACUGCACAGAAUCCAUCGCAUAUGCUCACUCAUUUGAUUUGGGCGGAAACUAAAU
.....((((..((((((((....).))))))).(((..(((((((((............))))))...)))..)))......))))..(((((.((....))..)))))(....)..... ( -24.50)
>consensus
AUUAAAUGCACUCUGAUUGGCAACUAAUUAGAUUUCCUUGCUAUUCGAUUCAAAUCAGUCGAAUGACUGCACAGAAUCCAUCGCAUAUGCUCACUCAUUUGAUUUGGGCGGAAACUAAAU
.....((((..((((((((....).))))))).(((..((((((((((((......)))))))))...)))..)))......))))..(((((.((....))..)))))(....)..... (-27.29 = -27.40 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:30 2006