Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,298,964 – 2,299,073 |
Length | 109 |
Max. P | 0.551254 |
Location | 2,298,964 – 2,299,073 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 87.72 |
Mean single sequence MFE | -27.67 |
Consensus MFE | -23.32 |
Energy contribution | -23.21 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.69 |
Structure conservation index | 0.84 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2298964 109 - 27905053 AAUUUCUUAU------AAAACCAGCUGAUGAUC-CCGACAGCGACUGUAUAAACAUAUUUGGCCCAUUCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC ..........------....(((((((.((...-.)).))))...(((....)))....))).....((((((((((.((((....((((.....))))..)))))))))))))). ( -27.40) >DroEre_CAF1 10434 115 - 1 AAUUUUUUAUACUUGUAAGA-CGGCUGAUGAUCCCUGACAGCGGCUGUAUAAACAUAUUUAGCCCAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC .............(((...(-((((((.((........)).)))))))....))).............(((((((((.((((....((((.....))))..))))))))))))).. ( -29.60) >DroYak_CAF1 4536 110 - 1 AAUUUUUUAC------AAGACCAGCUGAUGAUUCCUGGCAGGGGCUGUAUAAACAUAUUUAGCCAAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGCGGAC ..........------..(.((((..((....)))))))...(((((.(((....))).)))))....((.((((((.((((....((((.....))))..)))))))))).)).. ( -26.00) >consensus AAUUUUUUAU______AAGACCAGCUGAUGAUCCCUGACAGCGGCUGUAUAAACAUAUUUAGCCCAUCCCACAGAGCGAAACAAAGCUUACAACUUAAGAGGUUUGCUUUGUGGAC .......................(((((.........((((...))))..........))))).....(((((((((.((((....((((.....))))..))))))))))))).. (-23.32 = -23.21 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:46 2006