| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,291,611 – 16,291,731 |
| Length | 120 |
| Max. P | 0.760182 |
| Location | 16,291,611 – 16,291,731 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -26.68 |
| Energy contribution | -26.46 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.62 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16291611 120 + 27905053 UUUCGAGUUCACACAUUAAUUAUUCCCAGAUUUGUACAUAACCCCAGGGAUUUAUUAGCGUCGCGUGAUUGCAUUGUCCUUGCCAUUAUUUUUGUUGUUGUAAUAAUUAAUGUGGCACUU ....((((.(.(((((((((((((..(((........((((...(((((((......(((((....)).)))...)))))))...))))........))).)))))))))))))).)))) ( -24.99) >DroSec_CAF1 12274 120 + 1 UUUCGAGUUCACACAUUAAUUAUUCCCAGAUUUGUACAUAACCCCAGGGAUUUAUUAGCGUCGCGUGAUUGCAUUGUCCUUGCCAUUAUUUUUGUUGCUGUAAUAAUUAAUGUGGCACUU ....((((.(.(((((((((((((..(((........((((...(((((((......(((((....)).)))...)))))))...))))........))).)))))))))))))).)))) ( -27.19) >DroSim_CAF1 4389 120 + 1 UUUCGAGUUCACACAUUAAUUAUUCCCAGAUUUGUACAUAACCCCAGGGAUUUAUUAGCGUCGCGUGAUUGCAUUGUCCUUGCCAUUAUUUUUGUUGCUGUAAUAAUUAAUGUGGCACUU ....((((.(.(((((((((((((..(((........((((...(((((((......(((((....)).)))...)))))))...))))........))).)))))))))))))).)))) ( -27.19) >consensus UUUCGAGUUCACACAUUAAUUAUUCCCAGAUUUGUACAUAACCCCAGGGAUUUAUUAGCGUCGCGUGAUUGCAUUGUCCUUGCCAUUAUUUUUGUUGCUGUAAUAAUUAAUGUGGCACUU ....((((.(.(((((((((((((..(((........((((...(((((((......(((((....)).)))...)))))))...))))........))).)))))))))))))).)))) (-26.68 = -26.46 + -0.22)
| Location | 16,291,611 – 16,291,731 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -23.13 |
| Energy contribution | -23.47 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16291611 120 - 27905053 AAGUGCCACAUUAAUUAUUACAACAACAAAAAUAAUGGCAAGGACAAUGCAAUCACGCGACGCUAAUAAAUCCCUGGGGUUAUGUACAAAUCUGGGAAUAAUUAAUGUGUGAACUCGAAA .(((.((((((((((((((.((...............(((.......)))....(((..((.(((.........))).))..))).......))..))))))))))))).).)))..... ( -22.30) >DroSec_CAF1 12274 120 - 1 AAGUGCCACAUUAAUUAUUACAGCAACAAAAAUAAUGGCAAGGACAAUGCAAUCACGCGACGCUAAUAAAUCCCUGGGGUUAUGUACAAAUCUGGGAAUAAUUAAUGUGUGAACUCGAAA .(((.((((((((((((((.(((..............(((.......)))....(((..((.(((.........))).))..)))......)))..))))))))))))).).)))..... ( -24.50) >DroSim_CAF1 4389 120 - 1 AAGUGCCACAUUAAUUAUUACAGCAACAAAAAUAAUGGCAAGGACAAUGCAAUCACGCGACGCUAAUAAAUCCCUGGGGUUAUGUACAAAUCUGGGAAUAAUUAAUGUGUGAACUCGAAA .(((.((((((((((((((.(((..............(((.......)))....(((..((.(((.........))).))..)))......)))..))))))))))))).).)))..... ( -24.50) >consensus AAGUGCCACAUUAAUUAUUACAGCAACAAAAAUAAUGGCAAGGACAAUGCAAUCACGCGACGCUAAUAAAUCCCUGGGGUUAUGUACAAAUCUGGGAAUAAUUAAUGUGUGAACUCGAAA .(((.((((((((((((((.(((..............(((.......)))....(((..((.(((.........))).))..)))......)))..))))))))))))).).)))..... (-23.13 = -23.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:26 2006