Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,289,381 – 16,289,541 |
Length | 160 |
Max. P | 0.868836 |
Location | 16,289,381 – 16,289,501 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -40.23 |
Consensus MFE | -40.27 |
Energy contribution | -40.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 1.00 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16289381 120 - 27905053 AGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCCUUGUGGAGCACACAGCACUUUAUUUGCAUAUAAAACGUGU (((((((((((..........((((.....))))...((((..((((....))))..))))...)))))))))))(((((....))))).....(((((((((......)))))..)))) ( -42.50) >DroSec_CAF1 10009 120 - 1 AGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCCUUGUGGAGCACGCAGCACUUUAUUUGCAUAUAAAACGUGU (((((((((((..........((((.....))))...((((..((((....))))..))))...)))))))))))(((((....))))).....(((((((((......)))))..)))) ( -42.50) >DroSim_CAF1 2136 120 - 1 AGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCCUUGUGAAGCACACAGCACUUUAUUUGCAUAUAAAACGUGU (((((((((((..........((((.....))))...((((..((((....))))..))))...)))))))))))(((.(....).))).....(((((((((......)))))..)))) ( -35.70) >consensus AGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCCUUGUGGAGCACACAGCACUUUAUUUGCAUAUAAAACGUGU (((((((((((..........((((.....))))...((((..((((....))))..))))...)))))))))))(((((....))))).....(((((((((......)))))..)))) (-40.27 = -40.60 + 0.33)
Location | 16,289,421 – 16,289,541 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -43.10 |
Energy contribution | -43.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 1.00 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16289421 120 - 27905053 CCACCCACAGCCUUUGGAGUCGCGUGAGCAAUCAGAGCACAGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCC ...............(((((.(.((((((((..((.((...(((((.....))))).....((((...((((((((.......))))))))......))))))))))))))))).))))) ( -43.10) >DroSec_CAF1 10049 120 - 1 CCACCCACAGCCUUUGGAGUCGCGUGAGCAAUCAGAGCACAGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCC ...............(((((.(.((((((((..((.((...(((((.....))))).....((((...((((((((.......))))))))......))))))))))))))))).))))) ( -43.10) >DroSim_CAF1 2176 120 - 1 CCACCCACAGCCCUUGGAGUCGCGUGAGCAAUCAGAGCACAGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCC ...............(((((.(.((((((((..((.((...(((((.....))))).....((((...((((((((.......))))))))......))))))))))))))))).))))) ( -43.10) >consensus CCACCCACAGCCUUUGGAGUCGCGUGAGCAAUCAGAGCACAGGUGGGCAAAUCACCAGAAAGCCAGAAAGUGGCCAAGCCAAGUGGUCACUGCCGAGUGGCGCCUUUGUUCACCUGCUCC ...............(((((.(.((((((((..((.((...(((((.....))))).....((((...((((((((.......))))))))......))))))))))))))))).))))) (-43.10 = -43.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:17 2006