Locus 623

Sequence ID 3R_DroMel_CAF1
Location 2,298,783 – 2,298,877
Length 94
Max. P 0.841066
window993

overview

Window 3

Location 2,298,783 – 2,298,877
Length 94
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.20
Mean single sequence MFE -21.81
Consensus MFE -14.93
Energy contribution -15.18
Covariance contribution 0.25
Combinations/Pair 1.24
Mean z-score -1.87
Structure conservation index 0.68
SVM decision value 0.75
SVM RNA-class probability 0.841066
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2298783 94 + 27905053
UGCAGCAACAAGUUGAAGG--CACCUUGAUUGCAAUUAGUAGCAUU-----CUCCGACUUUGUUGCCACCUUAAUGAAAUGAAAACAAAGUUGGAAAAAAG-
....((((((((.((....--)).)))).)))).............-----.((((((((((((..((...........))..))))))))))))......- ( -23.40)
>DroPse_CAF1 9193 100 + 1
CACAGCAACAAGUUGAAGCUCCACCUUGAUUGCAAUUAGCUGCAGCUUUACCCCCAACAUUGUUGCUAUCCUAAUGAAAUGAAAACAAAGUUGGGAAAAA--
...(((((((((((((((((.((.((.(((....))))).)).)))))......)))).)))))))).(((((((....(....)....)))))))....-- ( -24.00)
>DroWil_CAF1 67140 91 + 1
UGAAGCAACAAGUUGAAGU--UAUCCUGAUUGCAAUUAGUAGCACU-----UUCUGACAAUCUCCUUGCCUUAAUGAAAUGAAAACAAAG--GGGAAAGG--
....((.((.(((((.(((--(.....)))).))))).)).))...-----.........(((((((....................)))--))))....-- ( -14.45)
>DroYak_CAF1 4351 94 + 1
UGCAGCAACAAGUUGAAGG--CAGCUUGAUUGCAAUUAGUAGCAUU-----CUCCGACUUUGUUGCCACCUUAAUGAAAUGAAAACAAAGUUGGAAAAAAG-
....(((((((((((....--))))))).)))).............-----.((((((((((((..((...........))..))))))))))))......- ( -27.60)
>DroAna_CAF1 7604 95 + 1
UGCAGCAACAAGUUGAAGC--CACCUUGAUUGCAAUUAGUAGGAGU-----CUCCGACAUUGUUGCCACCUUAAUGAAAUGAAAACAAAGUUGAAAAGGAGA
....((((((((.((....--)).)))).))))............(-----(((((((.(((((..((...........))..))))).))).....))))) ( -17.40)
>DroPer_CAF1 9181 100 + 1
CACAGCAACAAGUUGAAGCUCCACCUUGAUUGCAAUUAGCUGCAGCUUUACCCCCAACAUUGUUGCUAUCCUAAUGAAAUGAAAACAAAGUUGGGAAAAA--
...(((((((((((((((((.((.((.(((....))))).)).)))))......)))).)))))))).(((((((....(....)....)))))))....-- ( -24.00)
>consensus
UGCAGCAACAAGUUGAAGC__CACCUUGAUUGCAAUUAGUAGCAGU_____CUCCGACAUUGUUGCCACCUUAAUGAAAUGAAAACAAAGUUGGAAAAAA__
....((((((((.((......)).)))).))))...................((((((.(((((...................))))).))))))....... (-14.93 = -15.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:45 2006