Locus 6228

Sequence ID 3R_DroMel_CAF1
Location 16,277,047 – 16,277,146
Length 99
Max. P 0.816149
window10154

overview

Window 4

Location 16,277,047 – 16,277,146
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.35
Mean single sequence MFE -19.98
Consensus MFE -17.30
Energy contribution -17.02
Covariance contribution -0.28
Combinations/Pair 1.19
Mean z-score -1.46
Structure conservation index 0.87
SVM decision value 0.66
SVM RNA-class probability 0.816149
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16277047 99 - 27905053
CGAACCGAGCAUAAAUUAGCAAUGGCAAUGUAAUUACACUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCGAGGGGCGAGCA
((..((..((((((.((((..((((((.(((....))).........(((......))).....)))))).....)))).))))))...))..)).... ( -20.50)
>DroSec_CAF1 77384 99 - 1
CGCACCGAGCAUAAAUUAGCAAUGGCAAUGUAAUUACACUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCGAGGGGCGAGCA
(((.((..((((((.((((..((((((.(((....))).........(((......))).....)))))).....)))).))))))...)).))).... ( -21.60)
>DroEre_CAF1 78875 99 - 1
CGCACUGAGCAUAAAUUAGCAAUGGAAAUGUAAUUACACUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCGAGGGGCGAGCA
.(((((..((........))(((((((.(((....))).))))))).(((......)))...)))))............(((.((((....))))))). ( -20.80)
>DroYak_CAF1 63350 99 - 1
CGCACUGAGCAUAAAUUAGCAAUGGCAAUGUAAUUACACUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCGAGGGGCGAGCA
(((.((..((((((.((((..((((((.(((....))).........(((......))).....)))))).....)))).))))))..))..))).... ( -20.30)
>DroAna_CAF1 93580 99 - 1
CGCAGUGAGUAUGAAUUAGCAAUGGCAAUGUAAUUAUAUUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCAGAGGGCGAGCA
(((..((.((((((.((((..((((((...((...(((((((.........)))))))..))..)))))).....)))).))))))))....))).... ( -16.70)
>consensus
CGCACUGAGCAUAAAUUAGCAAUGGCAAUGUAAUUACACUUUCAUUAGAUUAAAAUAUCAUAAGUGCCAUAAAAAUUAAGUUAUGCCGAGGGGCGAGCA
(((.((..((((((.((((..((((((.(((....))).........(((......))).....)))))).....)))).))))))...)).))).... (-17.30 = -17.02 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:04 2006