Locus 6227

Sequence ID 3R_DroMel_CAF1
Location 16,273,025 – 16,273,129
Length 104
Max. P 0.886191
window10153

overview

Window 3

Location 16,273,025 – 16,273,129
Length 104
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 91.98
Mean single sequence MFE -33.90
Consensus MFE -29.25
Energy contribution -29.12
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.91
Structure conservation index 0.86
SVM decision value 0.94
SVM RNA-class probability 0.886191
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16273025 104 + 27905053
AUCGCUGAGCAGGG----UGCGGGGGAGUGUUGCAGCAAAGCAAAUAAUGUUAAAGUUGUUCCACAAGCAGCUGCUGCCAUCGCCACUACACACGGCGAAAUAAUUCA
.((((((.(...((----((((..((.(((..(((((..((((.....))))...)))))..))).(((....))).))..)).))))...).))))))......... ( -32.30)
>DroSec_CAF1 73313 104 + 1
AUCGCCGAGCAGGG----GGCGGGGGAGUGUUGCAGCAAAGCAAAUAUUGUUAAAGUUGUUCCACAAGCAGCUGCUGCCAUUGCCACUACACACGGCGAAAUAAUAAA
.((((((.(...((----(((((.((.(((..(((((..((((.....))))...)))))..))).(((....))).)).))))).))...).))))))......... ( -34.60)
>DroEre_CAF1 74647 104 + 1
AUCGCCGAGCAGGG----AGCGGGGUAGUGUUGCAGCAAAGCAAAUAUUGUUAAAGUUGUUCCACAAGCAGCUGCUGCUAUUGCCACUACACAUGGCGAAAUAGCUCA
......((((.((.----(((((.((.(((..(((((..((((.....))))...)))))..)))..))..))))).)).((((((.......))))))....)))). ( -33.50)
>DroYak_CAF1 58998 108 + 1
AUCGCCGAACAGGGGCGGGGCGGGGGAGUGUUGCAGCAAAGCAAAUAUUGUUAAAGUUGUUCCACAAGCAGCUGCUGCUAUUGCCACUACACACGGCGAAAUAAUUCA
.((((((....((((((((((((.((.(((..(((((..((((.....))))...)))))..)))......)).))))).))))).)).....))))))......... ( -35.20)
>consensus
AUCGCCGAGCAGGG____GGCGGGGGAGUGUUGCAGCAAAGCAAAUAUUGUUAAAGUUGUUCCACAAGCAGCUGCUGCCAUUGCCACUACACACGGCGAAAUAAUUCA
.((((((.((.........))((((.((((..(((((..((((.....))))..(((((((.....)))))))))))))))).)).)).....))))))......... (-29.25 = -29.12 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:02 2006