| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,272,431 – 16,272,521 |
| Length | 90 |
| Max. P | 0.929159 |
| Location | 16,272,431 – 16,272,521 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 71.80 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -8.38 |
| Energy contribution | -10.55 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16272431 90 + 27905053 GU-CAUGAAACUCGUUAUAAUACACCUA--CGGUGCAUGGAGUG-------AGCUGGCAUUUUGUCAGCUU--AUGAAUCCACUCCACUCCACAUCACUUAA ((-.(((...............((((..--.))))..(((((((-------(((((((.....))))))).--.((....))...)))))))))).)).... ( -24.20) >DroSec_CAF1 72710 90 + 1 GU-CAUGAAACUCGUUAUAAUACACCUA--CGGUGCGUGGAGUG-------AGCUGGCAUUUUGUCAGCUU--AUGAAUCCACUCCAUUCCACAUCACUUCA ((-.(((...............((((..--.)))).((((((((-------(((((((.....))))))))--))...))))).........))).)).... ( -25.60) >DroEre_CAF1 74035 83 + 1 GU-CAUGAAACUCGUUAUAAUACACCUA--CGGUGCGUGGAGUG-------AGCCGGCAUUUUGUCAGCUU--AUGAAUCCACU-------ACAUCACUUCA ((-.(((...............((((..--.)))).((((((((-------(((.(((.....))).))))--))...))))).-------.))).)).... ( -21.00) >DroWil_CAF1 85013 79 + 1 GUCCAUGGAACUCGUUAAAAUACACCUU--UUGUACAUAAAA----------------AUUAUGUGCGUGUACAUACAUACACUUGGG---ACA--GACACA ((((........................--..(((((((...----------------..)))))))(((((......)))))...))---)).--...... ( -17.30) >DroYak_CAF1 58375 85 + 1 GU-CAUGAAACUCGUUAUAAUACACCUA--AGGUGCGUGGAGUG-------AGCUGGCAUUUUGUCAGCUU--AUGAAUCCACUCC-----ACAUCACUUCA ..-..((((.............((((..--.)))).((((((((-------(((((((.....))))))).--.......))))))-----)).....)))) ( -26.90) >DroAna_CAF1 89462 88 + 1 GU-CAUGAAACUCGUUAUAAUACACCUUCCCGUUGAAUAGAGGUAUUGGGUGGCUGGCAUUUUGUCGGCUU--AUGAAUUCACUCCGCUCC----------- .(-(((((..............(((((.(((........).))....)))))((((((.....))))))))--))))..............----------- ( -20.80) >consensus GU_CAUGAAACUCGUUAUAAUACACCUA__CGGUGCAUGGAGUG_______AGCUGGCAUUUUGUCAGCUU__AUGAAUCCACUCC_____ACAUCACUUCA ...................((.((((.....)))).)).(((((.......(((((((.....)))))))..........)))))................. ( -8.38 = -10.55 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:01 2006