Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,271,798 – 16,271,926 |
Length | 128 |
Max. P | 0.894024 |
Location | 16,271,798 – 16,271,898 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.35 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -21.46 |
Energy contribution | -21.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.83 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16271798 100 + 27905053 GACGGCCAAUACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAA ((((((((.((((....((((.....(((.....)))......))))....-.((((.....))))---))))...)))))))).....((((.....)))).. ( -25.80) >DroSec_CAF1 72077 100 + 1 GACGGCCAAUACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAA ((((((((.((((....((((.....(((.....)))......))))....-.((((.....))))---))))...)))))))).....((((.....)))).. ( -25.80) >DroEre_CAF1 73366 100 + 1 GACGGCCAAUACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GCUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAA ....((((.........((((.....(((.....)))......))))....-......((..((((---.(((((......))))).))))..))...)))).. ( -30.70) >DroYak_CAF1 57696 100 + 1 GACAGCCAAUACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAA ((((((((.((((....((((.....(((.....)))......))))....-.((((.....))))---))))...)))))))).....((((.....)))).. ( -26.50) >DroAna_CAF1 88897 98 + 1 UACACCCAACACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUAGCAAAUAGCAGCUGGUUGUCAGGUUGUCUGGCUGUCGAGU--UUGG----UGGCAA ..((((.(((.......((((.....(((.....)))......))))........(((((..(............)..)))))...))--).))----)).... ( -20.10) >consensus GACGGCCAAUACUAAUCACACAUAAAUCAAAAAAUGACAUAAAGUGUACCA_ACAGCAGCUGGCUG___GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAA ....((((.........((((.....(((.....)))......)))).........((((((.(((...(((......)))..))).)))))).....)))).. (-21.46 = -21.46 + 0.00)
Location | 16,271,829 – 16,271,926 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.82 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -23.04 |
Energy contribution | -22.84 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.65 |
Structure conservation index | 0.83 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16271829 97 + 27905053 AAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAAACUGCCGACA----UGUAACACGGAAUCAAAA ...(((......(((((((.-.((((.....))))---)))......((((((.(((((...((.....))...)))))))))----.)).))))....)))... ( -26.80) >DroSec_CAF1 72108 97 + 1 AAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAAACUGCCGACA----UGUAACACGGAAUGAAAA ......(((...(((((((.-.((((.....))))---)))......((((((.(((((...((.....))...)))))))))----.)).))))...))).... ( -28.00) >DroEre_CAF1 73397 97 + 1 AAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GCUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAAACUGCCGACA----UGUAACACGGAAUCAAAA ...(((......((((..((-......((..((((---.(((((......))))).))))..))...((((.....))))...----))..))))....)))... ( -31.80) >DroYak_CAF1 57727 97 + 1 AAAUGACAUAAAGUGUACCA-ACAGCAGCUGGCUG---GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAAACUGCCGACA----UGUAACACGGAAUCAAAA ...(((......(((((((.-.((((.....))))---)))......((((((.(((((...((.....))...)))))))))----.)).))))....)))... ( -26.80) >DroAna_CAF1 88928 99 + 1 AAAUGACAUAAAGUGUAGCAAAUAGCAGCUGGUUGUCAGGUUGUCUGGCUGUCGAGU--UUGG----UGGCAAACUGCCGACACACCUAUAACACGAAAUCGAAA ....((((...(((...((.....)).)))...))))((((((((.(((.....(((--(((.----...))))))))))))).))))......((....))... ( -25.60) >consensus AAAUGACAUAAAGUGUACCA_ACAGCAGCUGGCUG___GGUGAUCUGGCUGUCAGGCAGCUGGCACAUGGCAAACUGCCGACA____UGUAACACGGAAUCAAAA ............((((.........((((((.(((...(((......)))..))).)))))).....((((.....))))...........)))).......... (-23.04 = -22.84 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:00 2006