Locus 6224

Sequence ID 3R_DroMel_CAF1
Location 16,265,233 – 16,265,329
Length 96
Max. P 0.928288
window10149

overview

Window 9

Location 16,265,233 – 16,265,329
Length 96
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 84.64
Mean single sequence MFE -31.40
Consensus MFE -24.45
Energy contribution -24.32
Covariance contribution -0.13
Combinations/Pair 1.11
Mean z-score -2.16
Structure conservation index 0.78
SVM decision value 1.19
SVM RNA-class probability 0.928288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16265233 96 + 27905053
UUAGGUG------------CGAGUGUGAGGCAGGAGGUUGAAGGACGAAGGCCGAGGCGACGAAAGUUGCUAGUCAACGGAGCGAGUGCAGGCAAACAAACGGCCGUG
...(((.------------((..(((...((.....(((((.((.(....)))..((((((....))))))..)))))...((....))..))..)))..)))))... ( -30.70)
>DroSec_CAF1 65632 96 + 1
GUGGGUG------------CUAGGGUGAGGCAGGAGGUUGAAGGACGAAGGGCGAGGCGACGAAAGUUGCUAGUCAACGGAGUGAGUGCAGGCAAACAAACGGCCGGG
.....((------------((.......))))...(((((.....((...(((..((((((....)))))).)))..))..((...((....)).))...)))))... ( -25.60)
>DroEre_CAF1 66847 95 + 1
AAGGGUG------------UGUGUGGGUGGCGAGAGGUUGAAGGACGAAGGCCGAGGCGACGAAAGUUGCCAGUCAACGGAGCGAGUGCAGGCAAACAAACGGCCGG-
..((.((------------(...((..((.(.....(((((.((.(....)))..((((((....))))))..)))))...((....)).).))..)).))).))..- ( -35.00)
>DroYak_CAF1 51082 108 + 1
GAGGGUGUUGGUGUGUGGGUGUGUGGGUGGCAGCAGGUUGAAGGACGAAGGCCGAGGCGACGAAAGUUGCUAGUCAACGGAGCGAGUGCAGGCAAACAAACGGCCGGG
..((.((((..(((.((.(..(((...((((...........((.(....)))..((((((....)))))).)))).....)))..).)).)))....)))).))... ( -34.30)
>consensus
GAGGGUG____________CGAGUGGGAGGCAGGAGGUUGAAGGACGAAGGCCGAGGCGACGAAAGUUGCUAGUCAACGGAGCGAGUGCAGGCAAACAAACGGCCGGG
............................(((.....(((((.((.(....)))..((((((....))))))..)))))...((........)).........)))... (-24.45 = -24.32 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:59 2006