Locus 6223

Sequence ID 3R_DroMel_CAF1
Location 16,264,556 – 16,264,649
Length 93
Max. P 0.715761
window10148

overview

Window 8

Location 16,264,556 – 16,264,649
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 81.16
Mean single sequence MFE -20.35
Consensus MFE -12.73
Energy contribution -13.31
Covariance contribution 0.58
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value 0.39
SVM RNA-class probability 0.715761
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16264556 93 + 27905053
ACUCUAGCAGCGCCUUUAUCGGGCAAAUCGCGCAGCUCAAAUGUUUGCC--GAAUCAAUAAAAAUAUAAUUUGCUGCGAUUUGGCUCAAAGGAAA
............(((((...((.((((((((((((.....((((((...--..........))))))...)))).)))))))).)).)))))... ( -21.72)
>DroVir_CAF1 92834 82 + 1
GAGCU-------U-UUUAUCGAGCAAAUCGCGCG---CAAAUGUUGACA--GAAUCAAUAAAAAUAUAAUUUGCUGUGAUUUGGCUCAAAGAGAA
...((-------(-(((...((((((((((((.(---((((((((((..--...))))).........)))))))))))))).)))))))))).. ( -22.40)
>DroPse_CAF1 75257 90 + 1
ACUUUAGCCAAGCUUUUAUCGAGCAAAUCGCGC---UGAAAUGUUUGCC--GAAUCAAUAAAAAUAUAAUUUGCUGCGAUUUGGCUCAAAGGAAA
.((((((((..((((.....))))(((((((((---....((((((...--..........)))))).....)).))))))))))).)))).... ( -22.92)
>DroGri_CAF1 104623 83 + 1
GCGCU-------UUUUUAUCUAGCAAAUCGCUCG---CAAAUGUUGACA--GAAUCAAUAAAAAUAUAAUUUGCUGUGAUUCGGCUCAAGGGAAG
...((-------(((((....(((.((((((..(---((((((((((..--...))))).........)))))).))))))..)))..))))))) ( -15.30)
>DroAna_CAF1 81807 80 + 1
AC------------UUUAUCGGGCAAAUCGCGCA---CAAAUGUUUGCCACGAAUCAAUAAAAAUAUAAUUUGCUGUGAUUUGGCUCAAAGGAAA
.(------------(((...((.(((((((((((---...((((((...............))))))....))).)))))))).)).)))).... ( -16.86)
>DroPer_CAF1 80688 90 + 1
ACUUUAGCCAAGCUUUUAUCGAGCAAAUCGCGC---UGAAAUGUUUGCC--GAAUCAAUAAAAAUAUAAUUUGCUGCGAUUUGGCUCAAAGGAAA
.((((((((..((((.....))))(((((((((---....((((((...--..........)))))).....)).))))))))))).)))).... ( -22.92)
>consensus
ACUCU_______CUUUUAUCGAGCAAAUCGCGC____CAAAUGUUUGCC__GAAUCAAUAAAAAUAUAAUUUGCUGCGAUUUGGCUCAAAGGAAA
....................((((((((((((((......((((((...............))))))....))).))))))).))))........ (-12.73 = -13.31 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:58 2006