| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,261,606 – 16,261,722 |
| Length | 116 |
| Max. P | 0.568514 |
| Location | 16,261,606 – 16,261,722 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.48 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -16.47 |
| Energy contribution | -17.72 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16261606 116 - 27905053 ACACUGGAAAAAUUAUACCGAUUUUGGGGUCAGACUAAGAGUAAGGGUGUCUGGCCUUAAGAGCUAAACUAGAUUGAGAUACCUUCAUACAUUCUUAGUUACAAGUUUCAGCUUCC .....((((............((((((((((((((.............))))))))))))))((((((((.((((((((.............))))))))...))))).))))))) ( -31.54) >DroSec_CAF1 62067 111 - 1 ACACUGGAAAAAAUAUACCAAUUUUGGGGUCAGAAUAAGGUUGAGGGUAUCUGGCCUUAAGAGCUAAAAUAGCUUAAGAA-----CAUACCUUCCAAGUUCCAAGCUCCAGCUUUC ...(((((.............(((((((((((((...............))))))))))))).........((((..(((-----(...........)))).)))))))))..... ( -25.96) >DroSim_CAF1 86072 111 - 1 ACACUGGAAAAAAUAUACCAAUUUUGGGGUCAGACUGGGGCUAAGGGUGUCUGGCCUUUAGAGCCAAAAUAGCUUGAGAU-----CAUACCUUCCAAGUUCCAAGCUCCAGCUUUC ...(((((............(((((((((((((((.............)))))))).......))))))).(((((.((.-----..............))))))))))))..... ( -28.99) >DroYak_CAF1 47562 100 - 1 ACACAGGGAAAAAUAUUCCGACUUGGGGGUAAGACUACG---UAGGCCGUCUAGCCU-AAGUGCUAAAAAAGAAUAAUAA-----CAUACCUUCCAAGU-------UUUAGCUUAA ......((((.....))))((((((((((((....(((.---(((((......))))-).)))((.....))........-----..)))).)))))))-------)......... ( -23.60) >consensus ACACUGGAAAAAAUAUACCAAUUUUGGGGUCAGACUAAGG_UAAGGGUGUCUGGCCUUAAGAGCUAAAAUAGAUUAAGAA_____CAUACCUUCCAAGUUCCAAGCUCCAGCUUUC ...(((((...............((((((((((((.............))))))))))))(((((.....)))))...............................)))))..... (-16.47 = -17.72 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:57 2006