Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,294,251 – 2,294,359 |
Length | 108 |
Max. P | 0.574093 |
Location | 2,294,251 – 2,294,359 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.58 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -18.01 |
Energy contribution | -17.38 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.31 |
Mean z-score | -1.66 |
Structure conservation index | 0.66 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2294251 108 - 27905053 CGGACCGCCUAUG--AACGGUC-------UGUAUAUUUAUCCGCUGCUCGGAUAUAUGUGUGCGACGUGGCCUUCUAUUAAUAUC---UCCCCACACUUUCACUUGGCUGCAGCUUUCCC .((((((......--..)))))-------)((((((.((((((.....))))))...))))))...(..(((.............---.................)))..)......... ( -27.51) >DroSec_CAF1 30475 108 - 1 CGGACCGCCUAUG--AACGGUC-------UGUAUAUUUAUCCGCUGCUCGGAUAUAUGUGUGCGACGUGGCCUUCUAUUAAUAUC---UCCUCACACUUUCACUUGGCUACAGCUUUCCC .((((((......--..)))))-------)((((((.((((((.....))))))...))))))...((((((.............---.................))))))......... ( -28.41) >DroSim_CAF1 32095 108 - 1 CGGACCGCCUAUG--AACGGUC-------UGUAUAUUUAUCCGCUGCUCGGAUAUAUGUGUGCGACGUGGCCUUCUAUUAAUAUC---UCCUCACACUUUCACUUGGCUACAGCUUUCCC .((((((......--..)))))-------)((((((.((((((.....))))))...))))))...((((((.............---.................))))))......... ( -28.41) >DroAna_CAF1 30074 120 - 1 CGGUCUGUAUCUGCUACUUGUCGGAUAAAUAUAUAUAUAUACACUAUAUAUGUAUGUGGUUGCGGCGUGGUCUUCUAUAAAUAUAUCCUCCUUACACUUUCACUUGGCUACAGUUUUCCC .((.(((((...((((...((((.(...(((((((((((((...)))))))))))))...).))))((((....))))..........................)))))))))....)). ( -25.20) >consensus CGGACCGCCUAUG__AACGGUC_______UGUAUAUUUAUCCGCUGCUCGGAUAUAUGUGUGCGACGUGGCCUUCUAUUAAUAUC___UCCUCACACUUUCACUUGGCUACAGCUUUCCC .(((..((...........(((........((((((.((((((.....))))))...)))))))))((((((.................................)))))).))..))). (-18.01 = -17.38 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:44 2006