Locus 6218

Sequence ID 3R_DroMel_CAF1
Location 16,249,025 – 16,249,119
Length 94
Max. P 0.896416
window10141

overview

Window 1

Location 16,249,025 – 16,249,119
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 93.09
Mean single sequence MFE -27.14
Consensus MFE -23.20
Energy contribution -23.92
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.99
SVM RNA-class probability 0.896416
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16249025 94 + 27905053
CUACAGCACAUGGCACGAGACUCAAUCGCGGCUCUCAAAGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCGAC
...((((....(((.((.((.....)).)))))......))))((((((((((.....((((.(.....).))))..))))......)))))). ( -27.00)
>DroSec_CAF1 49522 94 + 1
CUACAGCACAUGGCACGGGACUCAAUCGCGGCUCUCAAAGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCGAC
...((((....(((.((.((.....)).)))))......))))((((((((((.....((((.(.....).))))..))))......)))))). ( -28.60)
>DroSim_CAF1 73504 94 + 1
CUACAGCACAUGGCACGGGACUCAAUCGCGGCUCUCAAAGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCGAC
...((((....(((.((.((.....)).)))))......))))((((((((((.....((((.(.....).))))..))))......)))))). ( -28.60)
>DroEre_CAF1 50831 94 + 1
CUACAGCACAUGGCACGGGACUCAAUCGCGGUUCUCAAAGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCAAC
..........((((..((((..(......)..))))..((((....))))))))....((((.(.....).)))).(((((.....)))))... ( -24.60)
>DroAna_CAF1 62186 85 + 1
CAGCAGCACAUGCCACGAGACUCAAUCGU---------AGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCGAC
((((.((....)).((((.......))))---------.))))((((((((((.....((((.(.....).))))..))))......)))))). ( -26.90)
>consensus
CUACAGCACAUGGCACGGGACUCAAUCGCGGCUCUCAAAGCUGUCGAGCUGCCAAAUAUGCCACAUUAUGAGGCAAGGGCAACAUAUGCUCGAC
...((((....(((.((.((.....)).)))))......))))((((((((((.....((((.(.....).))))..))))......)))))). (-23.20 = -23.92 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:51 2006