Locus 6217

Sequence ID 3R_DroMel_CAF1
Location 16,229,761 – 16,229,868
Length 107
Max. P 0.910979
window10140

overview

Window 0

Location 16,229,761 – 16,229,868
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.65
Mean single sequence MFE -20.68
Consensus MFE -10.88
Energy contribution -10.77
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -2.43
Structure conservation index 0.53
SVM decision value 1.07
SVM RNA-class probability 0.910979
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16229761 107 + 27905053
AAAGGC----AAACAUCUGUUGGCCAUCUAUUGUCCUUUUGGCCAUAAAACAUAAGCCCUACUAAUAAACCCGGCUACGCCAACACUUCACAAACACG-GCCA-GCAGAGCCG-------
...(((----.....((((((((((.....((((....(((((..((.....))((((..............))))..)))))......))))....)-))))-)))))))).------- ( -28.74)
>DroPse_CAF1 39137 103 + 1
AAAGGC----AAACAUCUGUUGGCCAUCUAUUGUCCUUUUGGCCAUAAAACAUAAGCCCUACUAAUAAACUCGGCUACGCCAACACUUCACAAACAUG-ACCAAGCAC------------
...(((----..........((((((.............)))))).........((((..............))))..))).................-.........------------ ( -18.16)
>DroGri_CAF1 57635 107 + 1
AAAGGCCAGCUAGCAUCUGCUGGCCAUCCAUUGUCCUUCUAGCCAUAAAACAUAAGCCCUACUAAUAAACUCGACUAUGGCCACACUUCAUGCAUACA-CAAGCACAC------------
...(((((((........)))))))................((((((............................)))))).........(((.....-...)))...------------ ( -22.69)
>DroWil_CAF1 40069 89 + 1
AAAGGC----AAACAUCUGUUGGCCAUCUAUUGUCCUCUUGGCCAUAAAACAUAAGCCCUACUAAUAAACUCC---A-----------CACAGACACG-CUCACACAC------------
...(((----..........((((((.............))))))..........)))...............---.-----------..........-.........------------ ( -12.97)
>DroAna_CAF1 41771 115 + 1
AAAGGC----AAACAUCUGUUGGCCAUCUAUUGUCCUUUUGGCCAUAAAACAUAAGCCUUACUAAUAAACCCGGCUACGCCAACACUUCACAAAUACAAGCAA-GCCGUGACUGGCACUG
...(((----..........((((((.............)))))).........((((..............))))..)))......................-((((....)))).... ( -23.36)
>DroPer_CAF1 44384 103 + 1
AAAGGC----AAACAUCUGUUGGCCAUCUAUUGUCCUUUUGGCCAUAAAACAUAAGCCCUACUAAUAAACUCGGCUACGCCAACACUUCACAAACAUG-ACCAAGCAC------------
...(((----..........((((((.............)))))).........((((..............))))..))).................-.........------------ ( -18.16)
>consensus
AAAGGC____AAACAUCUGUUGGCCAUCUAUUGUCCUUUUGGCCAUAAAACAUAAGCCCUACUAAUAAACUCGGCUACGCCAACACUUCACAAACACG_ACCA_GCAC____________
...(((.....(((....)))(((((.............)))))...........))).............................................................. (-10.88 = -10.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:50 2006