Locus 6216

Sequence ID 3R_DroMel_CAF1
Location 16,220,438 – 16,220,529
Length 91
Max. P 0.939116
window10139

overview

Window 9

Location 16,220,438 – 16,220,529
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.29
Mean single sequence MFE -30.92
Consensus MFE -29.42
Energy contribution -29.86
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.95
SVM decision value 1.30
SVM RNA-class probability 0.939116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16220438 91 - 27905053
CAUUUUUUUCUGAGUGUCUGCAGUGAUAGCGGAGCUACUGCUGCGGUUGCAAACCGUUUUGGGGCGGACUCGUGUGGCAUUUAGCCGCUCU
...........(((((((((((((..((((...))))..)))))))..))...(((((....)))))))))(.(((((.....))))).). ( -32.60)
>DroSec_CAF1 20817 91 - 1
AAUUUUUUUCUGAGUGUCUGCAGUGAUAGCGGAGCUACUGCUGCGGUUGCAAACCGAUUUGAGGCGGACUCGUGUGGCAUUUGGCCGCUCU
...........(((((((((((((..((((...))))..)))))))..))...(((........)))))))(.(((((.....))))).). ( -30.20)
>DroSim_CAF1 19216 91 - 1
AAUUUUUUCCUGAGUGUCUGCAGUGAUGGCGGAGCUACUGCUGCGGUUGCAAACCGUUUUGAGGCGGACUCGUGUGGCAUUUCGCCGCUCU
...........(((((((((((((..((((...))))..)))))))..))...(((((....)))))))))(.(((((.....))))).). ( -32.30)
>DroEre_CAF1 21243 90 - 1
-CCUUUUUUCUGAGUGUCUGCUGGGAUAGCGAAGCUACUGCUGCGGUUGCAAACCGUUUUGAGGCGGACUCGUGUGGCAUUUGGCCGCUCU
-............(.(((((((..((......(((....)))(((((.....))))).))..))))))).)(.(((((.....))))).). ( -27.20)
>DroYak_CAF1 16578 90 - 1
-CCUUUUUUCUGAGUGUCUGCAGUGAUAGCGAAGCUACUGCUGCGGUUCCAAACCGUUUUGAGGCGGACUCGUGUGGCAUUUGGCCGCUCU
-..........((((..(((((((..((((...))))..))))))).......(((((....)))))))))(.(((((.....))))).). ( -32.30)
>consensus
_AUUUUUUUCUGAGUGUCUGCAGUGAUAGCGGAGCUACUGCUGCGGUUGCAAACCGUUUUGAGGCGGACUCGUGUGGCAUUUGGCCGCUCU
...........((((..(((((((..((((...))))..))))))).......(((((....)))))))))(.(((((.....))))).). (-29.42 = -29.86 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:49 2006