Locus 6214

Sequence ID 3R_DroMel_CAF1
Location 16,214,884 – 16,214,982
Length 98
Max. P 0.671732
window10136

overview

Window 6

Location 16,214,884 – 16,214,982
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -30.94
Consensus MFE -28.68
Energy contribution -28.68
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 0.93
SVM decision value 0.29
SVM RNA-class probability 0.671732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16214884 98 + 27905053
UGCCCGCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGUUACCAUGCUCCGGCAACCAUCAGCCAACUAACCCGCCG
.(((.((((......((((......))))))))..)))(((..............(((((......)))))(((........))).........))). ( -31.00)
>DroSec_CAF1 15193 98 + 1
UGCCCGCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGUUACCAUGCUCCGGCAACCAUCAGCCAACUAACCCGCCG
.(((.((((......((((......))))))))..)))(((..............(((((......)))))(((........))).........))). ( -31.00)
>DroSim_CAF1 13619 98 + 1
UGCCCGCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGUUACCAUGCUCCGGCAACCAUCAGCCAACUAACCCGCCG
.(((.((((......((((......))))))))..)))(((..............(((((......)))))(((........))).........))). ( -31.00)
>DroEre_CAF1 15587 97 + 1
UGCCCUCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGU-ACCGUGCUCCGGCAGCCAUGAGCCAACUAACCCGCCG
......((((.....((((......))))..(((((((.((..(....).....((((((-.....)))))))).))))..)))..........)))) ( -30.10)
>DroYak_CAF1 11061 97 + 1
UGCCCUCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGU-ACCGUGCUCCGGCAGCCAAGAGCCAACUAACCCGCCG
......((((.....((((......))))...((((((.((..(....).....((((((-.....)))))))).)))))).............)))) ( -31.60)
>consensus
UGCCCGCGGCAAACUGGUAAUUUUAUGCCCCGCUUGGCGGCAACUACGGAAUUUCGGAGUUACCAUGCUCCGGCAACCAUCAGCCAACUAACCCGCCG
......((((.....((((......))))....((((((....)...((....(((((((......)))))))...))....))))).......)))) (-28.68 = -28.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006