Locus 6213

Sequence ID 3R_DroMel_CAF1
Location 16,213,693 – 16,213,791
Length 98
Max. P 0.922595
window10135

overview

Window 5

Location 16,213,693 – 16,213,791
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 71.70
Mean single sequence MFE -26.92
Consensus MFE -11.61
Energy contribution -10.83
Covariance contribution -0.77
Combinations/Pair 1.40
Mean z-score -2.09
Structure conservation index 0.43
SVM decision value 1.15
SVM RNA-class probability 0.922595
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16213693 98 + 27905053
---UUCACCUGAGAUUGAUGUCGGCCAAUUUGUGCCGGUUUUACUCUCUGCAUUCUACGGCAUAUUAUCGUCUUGGGU--CGA----CCAUUCCGCUGGAGCAUCAG
---.(((((..((((.((((...(((.....((((.((........)).)))).....)))....))))))))..)))--.))----(((......)))........ ( -25.10)
>DroPse_CAF1 23322 94 + 1
ACCCUGGCCUGAGAUUGAUGUCGUCCAAUUUAUGCUGAAAUUACUCUCGGCAUUCUACUGCAUUUCAUAGUCUUGGG---CAAAUGCUUCUUCCGCU----------
......(((..((((((.((..((.((....(((((((........))))))).....)).))..))))))))..))---)....((.......)).---------- ( -24.30)
>DroSim_CAF1 12278 102 + 1
---UUCACCUGAGAUUGAUGUCGGCCAAUUUGUGCCGGCAUUACUCUCAGCAUUCUAUGGCAUUCCAUCGUCUUGGGU--CGAAUGCCCAUUCCGUUGGAGCAUCAU
---.....((((((.(((((((((((.....).)))))))))).))))))......((((..(((((.((...(((((--.....)))))...)).)))))..)))) ( -39.90)
>DroWil_CAF1 21255 96 + 1
---UUCGUCUGAGAUUGAUGUCGUCCAAUUUAUGCUGGAAUUACUCCUGGCAUUCAACUGCAUUUCAUGGUCUUGA-----CAAUGCUUCUACCA---CCGCAUAAC
---...(((.(((((((((((.((.......((((((((.....))).)))))...)).)))))....))))))))-----).((((........---..))))... ( -19.10)
>DroAna_CAF1 25909 95 + 1
---CUCUUCUGAGAUUGAUGUCGACCAAUUUGUGUUGGCAUUACUCUCCGCAUUCUACUGCAUUUCAUCGUCUUAGGGGCAGAAUG---------CUGCCGCAUCAG
---.......((((.(((((((((((.....).)))))))))).)))).((..((((..((........))..))))(((((....---------)))))))..... ( -28.80)
>DroPer_CAF1 28495 94 + 1
ACCCUGGCCUGAGAUUGAUGUCGUCCAAUUUAUGCUGAAAUUACUCUCGGCAUUCUACUGCAUUUCAUAGUCUUGGG---CAAAUGCUUCUUCCGCU----------
......(((..((((((.((..((.((....(((((((........))))))).....)).))..))))))))..))---)....((.......)).---------- ( -24.30)
>consensus
___CUCGCCUGAGAUUGAUGUCGUCCAAUUUAUGCUGGAAUUACUCUCGGCAUUCUACUGCAUUUCAUCGUCUUGGG___CGAAUGCUUCUUCCGCU___GCAUCA_
.......((((((((.(((((.(........((((.((........)).))))....).))))).....)))))))).............................. (-11.61 = -10.83 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:45 2006