Locus 6212

Sequence ID 3R_DroMel_CAF1
Location 16,211,369 – 16,211,486
Length 117
Max. P 0.859356
window10134

overview

Window 4

Location 16,211,369 – 16,211,486
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 95.09
Mean single sequence MFE -36.00
Consensus MFE -33.79
Energy contribution -32.90
Covariance contribution -0.89
Combinations/Pair 1.13
Mean z-score -1.14
Structure conservation index 0.94
SVM decision value 0.82
SVM RNA-class probability 0.859356
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16211369 117 + 27905053
UUACUUGGCGGCUGUGUUGUUGUCGUGGUGGCCAUUGUUGUGGUUGUUGUGGUUACCGGCUCCGUGAUGCUGAUGCCCACAAAUUCUGUUGUUUCCCUUGGGUCGACGAAAAUUACU
.....((((.((..((.......))..)).)))).....((((((.((((((.((.((((........)))).)).)))))).(((.((((...((....)).))))))))))))). ( -35.70)
>DroPse_CAF1 21262 114 + 1
UUACUUGGCGGCUGCGUUGUUGUUGUGGUUGCCAUUGUUGUGGU---UGUGGUCACCGGCUCUGUGAUGCUGAUGCCCACAAACUCUGUUGUUUCCCUUGGGUCAACGAAAAUUACU
.....(((((((..((.......))..))))))).....(((((---(((((.((.((((........)))).)).))))......(((((...((....)).)))))..)))))). ( -37.10)
>DroSec_CAF1 11512 117 + 1
UUACUUGGCGGCUGUGUUGUUGUCGUGGUGGCCAUUGUUGUGGUGCUUGUGGUUACCGGCUCUGUGAUGCUGAUGCCCACAAAUUCUGUUGUUUCCCUUGGGUCGACGAAAAUUACU
.....((((.((..((.......))..)).)))).....(((((..((((((.((.((((........)))).)).)))))).(((.((((...((....)).))))))).))))). ( -34.70)
>DroSim_CAF1 9942 117 + 1
UUACUUGGCGGCUGUGUUGUUGUCGUGGUGGCCAUUGUUGUGGUUGUUGUGGUUACCGGCUCUGUGAUGCUGAUGCCCACAAAUUCUGUUGUUUCCCUUGGGUCGACGAAAAUUACU
.....((((.((..((.......))..)).)))).....((((((.((((((.((.((((........)))).)).)))))).(((.((((...((....)).))))))))))))). ( -35.70)
>DroEre_CAF1 11690 117 + 1
UUACUUGGCGGCUGUGUUGUUGUCGUGGUGGCCAUUGUUGUGGUUGUUGUGGUUACCGGCUCCGUGAUGCUGAUGCCCACAAAUUCUGUUGUUUCCCUUGGGUCGACGAAAAUUACU
.....((((.((..((.......))..)).)))).....((((((.((((((.((.((((........)))).)).)))))).(((.((((...((....)).))))))))))))). ( -35.70)
>DroPer_CAF1 25807 114 + 1
UUACUUGGCGGCUGCGUUGUUGUUGUGGUUGCCAUUGUUGUGGU---UGUGGUCACCGGCUCUGUGAUGCUGAUGCCCACAAACUCUGUUGUUUCCCUUGGGUCAACGAAAAUUACU
.....(((((((..((.......))..))))))).....(((((---(((((.((.((((........)))).)).))))......(((((...((....)).)))))..)))))). ( -37.10)
>consensus
UUACUUGGCGGCUGUGUUGUUGUCGUGGUGGCCAUUGUUGUGGUUGUUGUGGUUACCGGCUCUGUGAUGCUGAUGCCCACAAAUUCUGUUGUUUCCCUUGGGUCGACGAAAAUUACU
.....((((.((..((.......))..)).)))).....(((((...(((((.((.((((........)))).)).))))).....(((((...((....)).)))))...))))). (-33.79 = -32.90 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:44 2006