Locus 6211

Sequence ID 3R_DroMel_CAF1
Location 16,209,871 – 16,209,970
Length 99
Max. P 0.531751
window10133

overview

Window 3

Location 16,209,871 – 16,209,970
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.18
Mean single sequence MFE -26.23
Consensus MFE -19.17
Energy contribution -18.07
Covariance contribution -1.11
Combinations/Pair 1.34
Mean z-score -1.53
Structure conservation index 0.73
SVM decision value -0.00
SVM RNA-class probability 0.531751
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16209871 99 + 27905053
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCUGGCCAAAAACUUUUGUCGGGUGCCUGGUGAAGG---GAAUUCGUGUUUAUAUAGCACAAAUUUGC
..........((((((.((((..((.((((((((.......)))))))).))...))))..)))))).(.---(((((.(((((.....))))).))))).) ( -23.10)
>DroPse_CAF1 19847 94 + 1
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCAGGCUGAAGUUU--------AUGGCUGGAGAGGGUGCAAAUGUGUGUUUAUGUAACACACAUUUUC
........((.((((..((......))...((((((((.(........--------..).))))))))))))))((((((((((.....))))))))))... ( -25.50)
>DroSim_CAF1 8479 99 + 1
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCUGGCCAAAAACUUUUGCCGGGUGGCUGGUGAAGG---GGAUUCGUGUUUAUAUAGCACAAAUUUGC
.................(.((.((((.((((...((((((.(((....))))))))).)))).)))).))---.)....(((((.....)))))........ ( -27.00)
>DroEre_CAF1 10178 99 + 1
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCUGGGCAAAAACUUUUGCCGGGUGGCUGGUGAAGG---GGAUUCGUGUUUAUAUGGCACAAAUUUGC
.(((((((.((((((..((......))...........((((((....)))))).)))))))))))))(.---(((((.(((((.....))))).))))).) ( -28.50)
>DroYak_CAF1 1029 99 + 1
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCUGGCCAAAAACUUUUGCUGGCUGACUGGUGAAGG---GGAUUCGUGUUUAUAUAGCACAAAUUUGC
.(((((((.((((.....((((.((.((((((((.......)))))))).)).)))))))))))))))(.---(((((.(((((.....))))).))))).) ( -27.80)
>DroPer_CAF1 24400 94 + 1
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCAGGCUGAAGUUU--------AUGGCUGGAGAGGGUGCAAAUGUGUGUUUAUGUAACACACAUUUUC
........((.((((..((......))...((((((((.(........--------..).))))))))))))))((((((((((.....))))))))))... ( -25.50)
>consensus
AUUCAUCAUGUCAUCAACGCCAUUACGAGUUUUUCCUGGCCAAAAACUUUUGCCGGGUGGCUGGUGAAGG___GAAUUCGUGUUUAUAUAGCACAAAUUUGC
.(((((((.((((((..((......))(((((((.......))))))).......))))))))))))).....(((((.(((((.....))))).))))).. (-19.17 = -18.07 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:43 2006