Locus 621

Sequence ID 3R_DroMel_CAF1
Location 2,293,577 – 2,293,697
Length 120
Max. P 0.562878
window991

overview

Window 1

Location 2,293,577 – 2,293,697
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -23.66
Consensus MFE -18.08
Energy contribution -18.32
Covariance contribution 0.24
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.562878
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2293577 120 + 27905053
ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG
...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....)))))))))((....)).. ( -23.40)
>DroSec_CAF1 29789 120 + 1
AGAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG
.((((((...(((.((......)).))).....))))))..............((((((((...............((((((....))))))....(....)))))))))((....)).. ( -24.50)
>DroSim_CAF1 31419 120 + 1
ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUUCGGAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG
...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....)))))))))((....)).. ( -21.50)
>DroYak_CAF1 28573 120 + 1
ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAGAGGAAAAUCAUUUUCUAAAUAUAAACAACAGUGCUCGGAAGAGCGCAAUGUGGGAGGAAAAUGAGCGAGAGUGG
...(..((((((((...............(((.....)))(((((((......)).)))))..........)))).((((((....))))))..))))..).........((....)).. ( -29.50)
>DroAna_CAF1 29487 104 + 1
ACAUUUCACAGUUGACUAAAACGUAAACACGAAAAAGUCGGAAAA-ACGAAAAUCAUUUUCUAAAUAUAUACAAUGGUACUCGAGAGAGAG---GGUCUGUGGAAAAU------------
...((((((((..((((....(((....)))....))))((((((-..........)))))).................(((....)))..---...))))))))...------------ ( -19.40)
>consensus
ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG
...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....))))))))).......... (-18.08 = -18.32 +   0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:43 2006