Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,293,577 – 2,293,697 |
Length | 120 |
Max. P | 0.562878 |
Location | 2,293,577 – 2,293,697 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -23.66 |
Consensus MFE | -18.08 |
Energy contribution | -18.32 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.53 |
Structure conservation index | 0.76 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2293577 120 + 27905053 ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG ...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....)))))))))((....)).. ( -23.40) >DroSec_CAF1 29789 120 + 1 AGAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG .((((((...(((.((......)).))).....))))))..............((((((((...............((((((....))))))....(....)))))))))((....)).. ( -24.50) >DroSim_CAF1 31419 120 + 1 ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUUCGGAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG ...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....)))))))))((....)).. ( -21.50) >DroYak_CAF1 28573 120 + 1 ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAGAGGAAAAUCAUUUUCUAAAUAUAAACAACAGUGCUCGGAAGAGCGCAAUGUGGGAGGAAAAUGAGCGAGAGUGG ...(..((((((((...............(((.....)))(((((((......)).)))))..........)))).((((((....))))))..))))..).........((....)).. ( -29.50) >DroAna_CAF1 29487 104 + 1 ACAUUUCACAGUUGACUAAAACGUAAACACGAAAAAGUCGGAAAA-ACGAAAAUCAUUUUCUAAAUAUAUACAAUGGUACUCGAGAGAGAG---GGUCUGUGGAAAAU------------ ...((((((((..((((....(((....)))....))))((((((-..........)))))).................(((....)))..---...))))))))...------------ ( -19.40) >consensus ACAUUUCACAGUUGACUAAAAUGUAAACACGAAGAAGUCGGAAAAAAGGAAAAUCAUUUUCUAAAUAUAUACAACGGUGCUCCGAAGAGCGCAAUGCGGGAGGAAAAUGAGCGAGAGUGG ...((((....((((((....(((....)))....)))))).......)))).((((((((...............((((((....))))))....(....))))))))).......... (-18.08 = -18.32 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:43 2006