Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,198,145 – 16,198,377 |
Length | 232 |
Max. P | 0.853510 |
Location | 16,198,145 – 16,198,265 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -21.74 |
Energy contribution | -21.30 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.13 |
Mean z-score | -1.68 |
Structure conservation index | 0.92 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16198145 120 + 27905053 CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUCCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. ( -25.60) >DroSec_CAF1 27333 120 + 1 CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. ( -25.60) >DroEre_CAF1 27533 120 + 1 CAUUAUUUGCAGUUAUCUCGGUGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........(((((.......((.(((((((.((((.(((....((.(((....))).....(((......))).......))....)))....)))).))))))).)).....))))).. ( -23.10) >DroYak_CAF1 29737 120 + 1 CAUUAUUUGCAGUUAUCUCGGUGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAACAUCUUUAAAAUGCCAUCAACAACAUAUUGUCA ........(((((.......((.(((((((.((((.(((....)))(((....))).....................................)))).))))))).)).....))))).. ( -20.30) >consensus CAUUAUUUGCAGUUACCUCGGCGGGUGGCACUUUAUUGCCAUUGCAAAGGUGACUUAAACUAAUUAAAAUAUUCCUCAAAGCCAAAGCAUCUUUAAAAUGCCAUCAACAACAUAUUGCCA ........((((((((((..((((.(((((......)))))))))..)))))))................................((((.......))))..............))).. (-21.74 = -21.30 + -0.44)
Location | 16,198,265 – 16,198,377 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -37.02 |
Consensus MFE | -31.84 |
Energy contribution | -31.90 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.07 |
Structure conservation index | 0.86 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16198265 112 + 27905053 UGCGU--------GUGUGUCAGUGUGCGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAACUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA (((((--------.((((((.((((((.((....((....))(((((.((((((....))))))))))).)).)))))).)))))).((.(((...))).))...........))))).. ( -35.80) >DroSec_CAF1 27453 112 + 1 UGCGU--------GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA ...((--------(((((((.((.(((((.(((.(((((.......((((((((....)))))))).....))).)).)))))))).)).)))....(((..........))))))))). ( -34.50) >DroEre_CAF1 27653 120 + 1 UGCCUGUGUGCCUGUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA (((((((((((((((((.(..((((((.((..((((....))....((((((((....))))))))))..)).))))))).)))))))))))).....)))))................. ( -43.30) >DroYak_CAF1 29857 112 + 1 UGCGU--------GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA ...((--------(((((((.((.(((((.(((.(((((.......((((((((....)))))))).....))).)).)))))))).)).)))....(((..........))))))))). ( -34.50) >consensus UGCGU________GUGUGUGAGUGUGUGUUCUGAGUCCUGGCAAGUUUACUUUAUGGUUGAGGUAAUUUAAAGGCGCACAGACACAGGCACACAACGUGGGCAAUAUUAACUAACGCACA .............((((((.(((.(((((.(((.(((((...(((((.((((((....)))))))))))..))).)).)))))))).((.(((...))).)).......))).)))))). (-31.84 = -31.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:35 2006