| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,197,684 – 16,197,804 |
| Length | 120 |
| Max. P | 0.984380 |
| Location | 16,197,684 – 16,197,804 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -28.55 |
| Energy contribution | -30.18 |
| Covariance contribution | 1.63 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16197684 120 + 27905053 UUAAUAUGCAACGAAAUUUCCCACAGACACUCCGGCUGAGCUGGUUGAUGUUUUCCGCCCUCUAAGACACAUGCCAGCUGUUAAAGAGUGCCGGGAAAAUUGCUGCAUUUUAUGCACUUU .(((.(((((.(((..((((((...(.(((((......(((((((((.((((((.........)))))))).)))))))......)))))).)))))).))).))))).)))........ ( -34.00) >DroSec_CAF1 26816 120 + 1 UUAAUAUGCAACGAAAUUUCCCACAGACACUCCGGCUGAGCUGGUUGAUGUUUUCCGCCCUCUAAGACACAUGCCAGCUUUUAAAGAGUGCCGGAAAAAUUGCUGCAUUUUAUGCACUUU .(((.(((((.(((..(((((....(.(((((.....((((((((((.((((((.........)))))))).)))))))).....)))))).)))))..))).))))).)))........ ( -33.40) >DroEre_CAF1 27034 120 + 1 UUAAUAUGCAACGAAAUUUCCCACAGACACGCUGGAUGAGUUGGUUGAUGUUUUUCGCCCUCUAAGACACAUGCCAGCUGUUAAAGAGUGCCGGGAAAAUUGCUGCAUUUUAUGCACUUU .(((.(((((.(((..((((((...(.(((.((..(..(((((((((.((((((.........)))))))).)))))))..)..)).)))).)))))).))).))))).)))........ ( -30.80) >DroYak_CAF1 29238 120 + 1 UUAAUAUGCAACGAAAUAUCCCACAGACACUCUGGCUGAGCUGGUUGAUAUUUUUCGCCCUCUAAGACACAUGCCAGCUGCUAAAGAGUGCGGGGAAAAUUGCAUUAUUUUAUGCACUUU ..................((((...(.(((((((((..(((((((.....((((.........)))).....))))))))))..))))))).))))....(((((......))))).... ( -31.80) >consensus UUAAUAUGCAACGAAAUUUCCCACAGACACUCCGGCUGAGCUGGUUGAUGUUUUCCGCCCUCUAAGACACAUGCCAGCUGUUAAAGAGUGCCGGGAAAAUUGCUGCAUUUUAUGCACUUU .(((.(((((.(((..((((((...(.((((((.....(((((((((.((((((.........)))))))).))))))).....))))))).)))))).))).))))).)))........ (-28.55 = -30.18 + 1.63)
| Location | 16,197,684 – 16,197,804 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -36.35 |
| Consensus MFE | -33.28 |
| Energy contribution | -34.40 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16197684 120 - 27905053 AAAGUGCAUAAAAUGCAGCAAUUUUCCCGGCACUCUUUAACAGCUGGCAUGUGUCUUAGAGGGCGGAAAACAUCAACCAGCUCAGCCGGAGUGUCUGUGGGAAAUUUCGUUGCAUAUUAA ........(((.(((((((((.((((((((((((((.....((((((.((((((((....)))).....))))...)))))).....))))))))...)))))).)).))))))).))). ( -41.10) >DroSec_CAF1 26816 120 - 1 AAAGUGCAUAAAAUGCAGCAAUUUUUCCGGCACUCUUUAAAAGCUGGCAUGUGUCUUAGAGGGCGGAAAACAUCAACCAGCUCAGCCGGAGUGUCUGUGGGAAAUUUCGUUGCAUAUUAA ........(((.(((((((((.((((((((((((((.....((((((.((((((((....)))).....))))...)))))).....))))))))...)))))).)).))))))).))). ( -38.20) >DroEre_CAF1 27034 120 - 1 AAAGUGCAUAAAAUGCAGCAAUUUUCCCGGCACUCUUUAACAGCUGGCAUGUGUCUUAGAGGGCGAAAAACAUCAACCAACUCAUCCAGCGUGUCUGUGGGAAAUUUCGUUGCAUAUUAA ........(((.(((((((((.(((((((((((.........(((((.(((.((((....))))((......))........)))))))))))))...)))))).)).))))))).))). ( -32.90) >DroYak_CAF1 29238 120 - 1 AAAGUGCAUAAAAUAAUGCAAUUUUCCCCGCACUCUUUAGCAGCUGGCAUGUGUCUUAGAGGGCGAAAAAUAUCAACCAGCUCAGCCAGAGUGUCUGUGGGAUAUUUCGUUGCAUAUUAA ...............(((((((..((((((((((((...((((((((.....((((....))))((......))..))))))..)).)))))))..).))))......)))))))..... ( -33.20) >consensus AAAGUGCAUAAAAUGCAGCAAUUUUCCCGGCACUCUUUAACAGCUGGCAUGUGUCUUAGAGGGCGAAAAACAUCAACCAGCUCAGCCAGAGUGUCUGUGGGAAAUUUCGUUGCAUAUUAA ........(((.(((((((((.((((((((((((((.....((((((.((((((((....)))).....))))...)))))).....))))))))...)))))).)).))))))).))). (-33.28 = -34.40 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:32 2006