Locus 6205

Sequence ID 3R_DroMel_CAF1
Location 16,197,506 – 16,197,604
Length 98
Max. P 0.737600
window10121

overview

Window 1

Location 16,197,506 – 16,197,604
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -22.11
Consensus MFE -21.10
Energy contribution -21.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.95
SVM decision value 0.44
SVM RNA-class probability 0.737600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16197506 98 + 27905053
UCAUUUAGUCCUUCUGGCUGGCACAACAGCUUGAGUUCAGGCGCCUCUGAUUUAUCUGCCAGUCAGCUUAUAAAUAUUUCAAGUCCAUUUUAGUGCAU
..(((((......((((((((((.....(((((....)))))......((....))))))))))))....)))))....................... ( -23.20)
>DroSec_CAF1 26644 92 + 1
UCAUUUACUCCUUCGGGCUGGCACAACAGCUUGAGUUCAGGCGCCUCUGAUUUAUCUGCCAGUCAGCUUAUAAAUAUUUCAAGUCCU------UGCAU
............((((((((......))))))))((...(((.......((((((..((......))..)))))).......)))..------.)).. ( -19.94)
>DroEre_CAF1 26868 92 + 1
UCAUUUAGUCCUUCUGGCUGGCACAACAGCUUGAGUUCAGGCGCCUCUGAUUUAUCUGCCAGUCAGCUUAUAAAUAUUUCAAGUCCU------UGCAU
..(((((......((((((((((.....(((((....)))))......((....))))))))))))....)))))............------..... ( -23.20)
>consensus
UCAUUUAGUCCUUCUGGCUGGCACAACAGCUUGAGUUCAGGCGCCUCUGAUUUAUCUGCCAGUCAGCUUAUAAAUAUUUCAAGUCCU______UGCAU
..(((((......((((((((((.....(((((....)))))......((....))))))))))))....)))))....................... (-21.10 = -21.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:30 2006