Locus 6193

Sequence ID 3R_DroMel_CAF1
Location 16,188,108 – 16,188,223
Length 115
Max. P 0.808290
window10091

overview

Window 1

Location 16,188,108 – 16,188,223
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -23.10
Consensus MFE -23.18
Energy contribution -23.06
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 1.00
SVM decision value 0.64
SVM RNA-class probability 0.808290
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16188108 115 + 27905053
GGGGAAAAAACAUUUUAAUAUUGGUUUACAUUUAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUAGUUGCAUUAUUUA
.(((...(((((((...(((((((.......)))))))...)))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ ( -23.60)
>DroSec_CAF1 17320 115 + 1
GGGGAAAAAACAUUUUAAUAUUGGUUUACAUUUAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUAGUUGCAUUAUUUA
.(((...(((((((...(((((((.......)))))))...)))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ ( -23.60)
>DroSim_CAF1 10877 115 + 1
GGGGAAAAAACAUUUUAAUAUUGGUUUACAUUUAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUAGUUGCAUUAUUUA
.(((...(((((((...(((((((.......)))))))...)))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ ( -23.60)
>DroEre_CAF1 16567 115 + 1
GGGGAAAAAACAUUUUGGUAUUGGUUUACAUUAAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUAGUUGCAUUAUUUA
.(((...(((((((..(((((..(((((...)))))))))))))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ ( -21.50)
>DroYak_CAF1 17952 115 + 1
GGGGAAAAAACAUUUUAAUAUUGGUUUACAUUUAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUGGUUGCAUUAUUUA
.(((...(((((((...(((((((.......)))))))...)))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ ( -23.20)
>consensus
GGGGAAAAAACAUUUUAAUAUUGGUUUACAUUUAAUAUGCUGAUGUUUAAGCCUAUUAAGAGUGAUUAAAAAUGGGUUGAAGACAUUAUCAUGCUCAAUUUAGUUGCAUUAUUUA
.(((...(((((((...(((((((.......)))))))...)))))))...))).......(..((((((..((((((((........))).))))).))))))..)........ (-23.18 = -23.06 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:01 2006