| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,186,903 – 16,187,015 |
| Length | 112 |
| Max. P | 0.937741 |
| Location | 16,186,903 – 16,187,015 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.08 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -23.68 |
| Energy contribution | -23.60 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16186903 112 + 27905053 AAAUUCUAACCGCAAAUUGCGGAAAUGCCUGUCUGGGCC--------GUCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUCCUCGACGCACACAC .........((((.....))))....((((....)))).--------((.(((((....((((((......)))))).))))).))............((((..........)))).... ( -25.60) >DroPse_CAF1 16031 120 + 1 AAAUCCCAACCACAAAUUGUGGAAAUGCCUGUCUGGGCUGCUGUCCUGUCUGCCUGUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCACUGCUCAACUCAUACAC .........((((.....))))...(((((....((((....))))(((.((((((...((((((......)))))))))))).)))..........)).)))................. ( -24.10) >DroSec_CAF1 16126 112 + 1 AAAUUCUAACCGCAAAUUGCGGAAAUGCCUGUCUGGGCC--------GUCUGCCGCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUCCUCGACGCACACAC .........((((.....))))....((((....)))).--------((.((((.....((((((......))))))..)))).))............((((..........)))).... ( -24.90) >DroSim_CAF1 9682 112 + 1 AAAUUCUAACCGCAAAUUGCGGAAAUGCCUGUCUGGGCC--------GUCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUCCUCGACGCACACAC .........((((.....))))....((((....)))).--------((.(((((....((((((......)))))).))))).))............((((..........)))).... ( -25.60) >DroEre_CAF1 15374 112 + 1 AAAUUCUAACCGCAAAUUGCGGAAAUGCCUGUCUGGGCC--------GUCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUGUCCGACGCACACAC .........((((.....))))....((((....)))).--------((.(((((....((((((......)))))).))))).))............((((..........)))).... ( -25.60) >DroYak_CAF1 16766 112 + 1 AAAUUCUAACCGCAAAUUGCGGAAACGCCUGUCUGGGCC--------GUCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUGCUCGACGCACACAC ...........((.....(((....)))..(((.((((.--------...(((((....((((((......)))))).)))))..(((((......)))))....)))))))))...... ( -25.90) >consensus AAAUUCUAACCGCAAAUUGCGGAAAUGCCUGUCUGGGCC________GUCUGCCUCUCUAAUUGUCUGUACAUAAUUUAGGCAAACAUUUUUAAUUAAGUGCAAUCCUCGACGCACACAC .........((((.....))))....((((....)))).........((.(((((....((((((......)))))).))))).))............((((..........)))).... (-23.68 = -23.60 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:00 2006