Locus 6191

Sequence ID 3R_DroMel_CAF1
Location 16,186,762 – 16,186,858
Length 96
Max. P 0.838538
window10089

overview

Window 9

Location 16,186,762 – 16,186,858
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 95.46
Mean single sequence MFE -28.14
Consensus MFE -25.30
Energy contribution -25.66
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.90
SVM decision value 0.74
SVM RNA-class probability 0.838538
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16186762 96 + 27905053
AAAAUAUGAGGCGUCGGCCACUUAAGGAC-UCUUUCCAGCCAGAUUGCCUUCAUAAUAAGCGCGGUAAGUGAGUUUGGCGCCAAGGAAAACUCAUGU
...((((((((((((((((((((..(((.-....)))......((((((((......))).)))))))))).).))))))))..(.....))))))) ( -26.60)
>DroSec_CAF1 15984 97 + 1
AAAAUAUGAGGCGUCGGCCACUUAAGGAAUUCUUUUCAGCCAGAUUGCCUUCAUAAUAAGCGCGGUAAGUGAGUUUGGCGCCGAGGAAAACUCAUGU
...(((((((.(.(((((.......((((....)))).((((((((..(((......)))(((.....)))))))))))))))).)....))))))) ( -29.60)
>DroSim_CAF1 9540 97 + 1
AAAAUAUGAGGCGUCGGCCACUUAAGGACUUCUUUUCAGCCAGAUUGCCUUCAUAAUAAGCGCGGUAAGUGAGUUUGGCGCCGAGGAAAACUCAUGU
...(((((((.(.(((((.....((((....))))...((((((((..(((......)))(((.....)))))))))))))))).)....))))))) ( -28.40)
>DroEre_CAF1 15238 96 + 1
AAAAUAUGAGGCGUCGGCCACUUAAGGACU-UUUUCCAGCCAGAUUGCCCUCCUAAUAAGCGCGGUAAGUGAGUUUGGCGGCGAGGAAAACUCAUGU
...(((((((.(.(((.((......(((..-...))).((((((((((...((..........))...)).))))))))))))).)....))))))) ( -28.30)
>DroYak_CAF1 16630 96 + 1
AAAAUAUGAGGCGUCGGCCACUUAAGGACU-UUUUCCAGCCAGAUUGCCUUCAUAAUAAGCGCGGUAAGUGAGUUUGGCGGCGAGGAAAACUCAUGU
...(((((((.(.(((.((......(((..-...))).((((((((..(((......)))(((.....)))))))))))))))).)....))))))) ( -27.80)
>consensus
AAAAUAUGAGGCGUCGGCCACUUAAGGACUUCUUUCCAGCCAGAUUGCCUUCAUAAUAAGCGCGGUAAGUGAGUUUGGCGCCGAGGAAAACUCAUGU
...(((((((.(.(((((.......(((......))).(((((((((((..............)))).....)))))))))))).)....))))))) (-25.30 = -25.66 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:59 2006