Locus 6189

Sequence ID 3R_DroMel_CAF1
Location 16,185,016 – 16,185,110
Length 94
Max. P 0.717247
window10085

overview

Window 5

Location 16,185,016 – 16,185,110
Length 94
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -24.07
Consensus MFE -19.03
Energy contribution -19.70
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.48
Structure conservation index 0.79
SVM decision value 0.39
SVM RNA-class probability 0.717247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16185016 94 + 27905053
AUGGUAGCCAUUUCGUGCUGGUCACCUCACUUGGCCAGUGGGCCAAACAGAAAACGAAAAACCAAAAAU-------AAAAAACGGCGGAAGCCAAAUUUGC
.((((.....((((((.(((((......))((((((....)))))).)))...)))))).)))).....-------.......(((....)))........ ( -27.40)
>DroSec_CAF1 14187 101 + 1
AUGGUGGCCAUUUGGUGCUGGUCACCUCACUUGGCCAGUGGGCAAAACAGAAAACGAAAAACCAAAAAUAAAAAAUAAAAAACGACGGAAGCCAAAUUUGC
.((((..((.((((((((((((((.......)))))))).(......)............))))))..((.....)).........))..))))....... ( -21.50)
>DroSim_CAF1 7761 101 + 1
AUGGUGGCCAUUUGGAGCUGGUCACCUCACUUGGCCAGUGGGCCAAACAGAAAACGAAAAACCAAAAAUAAAAAAUAAAAAACGACGGAAGCAAAAUUUGC
..((((((((........))))))))....((((((....)))))).....................................(.(....))......... ( -23.30)
>consensus
AUGGUGGCCAUUUGGUGCUGGUCACCUCACUUGGCCAGUGGGCCAAACAGAAAACGAAAAACCAAAAAUAAAAAAUAAAAAACGACGGAAGCCAAAUUUGC
..((((((((........))))))))....((((((....)))))).....................................(.(....))......... (-19.03 = -19.70 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:55 2006