| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,183,197 – 16,183,311 |
| Length | 114 |
| Max. P | 0.533876 |
| Location | 16,183,197 – 16,183,311 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.06 |
| Mean single sequence MFE | -39.28 |
| Consensus MFE | -26.95 |
| Energy contribution | -27.95 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16183197 114 - 27905053 --AA---AA-AAAAAUGCAGGGGCAGAAAGAGUGGGCCAGAAACAAGCCAUGGAACAAAUGCUGGCCUGGCUCUGGUUCUGGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG --..---..-...((((((((.((((((.....((((((((..((.((((.(.(.....).))))).))..))))))))...)))))....).))))))))((((((.....)))))).. ( -42.20) >DroPse_CAF1 11645 113 - 1 --AAACGAA-AAAGAU--GGGGG--GAAAAAAGGAACCUGCAACAAGCAUCGGACCAAAUGCUGUCCUGGUUCUGGUUCUGGUUCUGGAUCUGCCUACGUUGCGGCUGCUGUGGUUGCAG --.......-.....(--(((.(--((.....(((((((((.....)))..((((((...(((.....)))..)))))).))))))...))).))))...(((((((.....))))))). ( -33.90) >DroSec_CAF1 12394 112 - 1 GCAAAA-AA-AAAAAUGCAAGGGCAGAAAGAGUGGGCCAGGAACAAGCCAUGGAACAAAUGCUGGCCUGGUUCU------GGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG ......-..-...((((((..(((((.......(((((((((.((.((((.(.(.....).))))).)).))))------))))).....)))))))))))((((((.....)))))).. ( -38.50) >DroSim_CAF1 5915 116 - 1 --AAAA-AA-AAUAAUGCAGGGGCAGAAAGAGUGGGCCAGGAACAAGCCAUGGAACAAAUGCUGGCCUGGUUCUGGUUCUGGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG --....-..-...((((((((.((((((.....(((((((((.((.((((.(.(.....).))))).)).)))))))))...)))))....).))))))))((((((.....)))))).. ( -41.40) >DroEre_CAF1 11200 110 - 1 -------AA-AAAAUUGAGGAGGCAGAAAGAG--GGCCAGGAACAAGCCAUGGAACAAAUGCUGGCCUGGUUCUGGUUCUGGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG -------..-........(.((((((....((--((((((((.(((((((.((..((.....)).))))))).)).))))))))))....)))))).)..(((((((.....))))))). ( -40.90) >DroYak_CAF1 13291 105 - 1 -------AUUAAAGUGGAAGAGGCAGAAAGAG--AGCCAGGAACAAGCCAUGGAACAAAUGCUGGCCUGGUUCU------GGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG -------.............((((((....((--((((((((.((.((((.(.(.....).))))).)).))))------))))))....))))))....(((((((.....))))))). ( -38.80) >consensus __AA___AA_AAAAAUGCAGGGGCAGAAAGAGUGGGCCAGGAACAAGCCAUGGAACAAAUGCUGGCCUGGUUCUGGUUCUGGUUCUGGAACUGCCUGCGUUGCGGCUGCUGUGGUUGCAG ....................((((((.........((((((....(((............)))..))))))(((((........))))).))))))....(((((((.....))))))). (-26.95 = -27.95 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:52 2006