| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,182,850 – 16,182,944 |
| Length | 94 |
| Max. P | 0.756079 |
| Location | 16,182,850 – 16,182,944 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.01 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -19.87 |
| Energy contribution | -19.82 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16182850 94 + 27905053 -------------UGGCGUGUCGAGAUGCGGCAACAUGCUGCA----CUACGUACGUAUAUCUAGGUGUACG--------UAUGUAUAAAUAAAAAUCGCCAACAGAUGUUGGAAG-GAC -------------......(((..((((((((.....))))).----.(((((((((((((....)))))))--------)))))).........))).(((((....)))))...-))) ( -33.00) >DroSec_CAF1 12047 94 + 1 -------------UGGCGUGUCGAGAUGCGGCAACAUGCUGCA----CUACGUACGUAUAUCUAGGGCUACG--------UAUGUAUAAAUAAAUAUCGCCAGCAGCUGUUGGAAG-GAC -------------......(((..((((((((.....))))).----.((((((((((..(....)..))))--------)))))).........))).(((((....)))))...-))) ( -26.90) >DroSim_CAF1 5568 94 + 1 -------------UGGCGUGUCGAGAUGCGGCAACAUGCUGCU----CUACGUACGUAUAUCUAGGUGUACG--------UAUGUAUAAAUAAAAAUCGCCAGCAGCUGUUGGAAG-GAC -------------......(((..((((((((.....))))).----.(((((((((((((....)))))))--------)))))).........))).(((((....)))))...-))) ( -32.50) >DroPer_CAF1 11224 112 + 1 ACAGGGGCCGGGUGGGCGUGUCGAGAUGUUGCAACACUCUGCUGGGUAUAUGUAUGUACAUACAUCUCAACG--------UAUGUAUAAAUAAAAAUCGCCAGCAGCUGUUGGACGGGAU (((...(((.((..((.((((.(........).))))))..)).)))...))).(((((((((........)--------))))))))........((((((((....))))).)))... ( -35.40) >DroEre_CAF1 10881 102 + 1 -------------UGGCGUGUCGAGAUGCGGCACCAUGCUGUG----CUACGUACGUAUGUCUAGGUAUACGUACAUAUGUAUGUAUAAAUAAAAAUCGCCAGCAGCUGUUGGAAG-GAC -------------.(((((((((.....))))))..(((((.(----((((((((((((((...(.....)..)))))))))))))............))))))))))........-... ( -32.50) >DroYak_CAF1 12970 94 + 1 -------------UGGCGUGUCGAGAUGCGGCACCAUGCUGUA----CUACGUACGUAUAUCUAGGUAUACG--------UAUGUAUAAAUAAAAAUCGCCAGCAGCUGUUGGAAG-GAU -------------.(((((((((.....))))))...)))...----.(((((((((((((....)))))))--------)))))).........(((.(((((....)))))...-))) ( -31.30) >consensus _____________UGGCGUGUCGAGAUGCGGCAACAUGCUGCA____CUACGUACGUAUAUCUAGGUAUACG________UAUGUAUAAAUAAAAAUCGCCAGCAGCUGUUGGAAG_GAC ...................(((..((((((((.....)))))......(((((((((((((....)))))))........)))))).........))).(((((....)))))....))) (-19.87 = -19.82 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:51 2006