Locus 6180

Sequence ID 3R_DroMel_CAF1
Location 16,176,064 – 16,176,156
Length 92
Max. P 0.938919
window10071

overview

Window 1

Location 16,176,064 – 16,176,156
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 92.57
Mean single sequence MFE -36.45
Consensus MFE -31.25
Energy contribution -32.25
Covariance contribution 1.00
Combinations/Pair 1.04
Mean z-score -2.21
Structure conservation index 0.86
SVM decision value 1.27
SVM RNA-class probability 0.938919
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16176064 92 + 27905053
CACUUGCACUUAACGCCUGCCUAGGCGGGUGGAAAAGGGGGCGUGGCGGGAGUGAGAUACUUGUCCUGCUCUCAUGCAUGUGGAUAAUGGCU
(((.((((.....(((((((....))))))).....(((((((.((((((.........)))))).))))))).)))).))).......... ( -36.50)
>DroSec_CAF1 5345 92 + 1
CACUUGCACUUAACGCCUGCCUAGGCGGGUGGAAAAGGGGGCGUGGCGGGAGGAAGAUACUUGUCCUGCUCUCAUGCAUGUGGAUAAUGACU
(((.((((.....(((((((....))))))).....(((((((.((((((.........)))))).))))))).)))).))).......... ( -36.50)
>DroEre_CAF1 4135 92 + 1
CACUUGCACUUAACGCCUGCCUAGGCGGGUGGAAAACGGGGCGUGGCGGGAGGGAGAUACUUGUCCUGGCCUCAUGCAUGUGGAUAAUGACU
(((.((((.....(((((((....)))))))......(((((....(((((.((......)).)))))))))).)))).))).......... ( -34.90)
>DroYak_CAF1 6188 89 + 1
CACUUGCACUUAACGCCUGCCUAGGCGGGUGGAAAAGGGG--GUGGCGGGAAGGACAUACUUGUCCUGGCCUCAUGCAUGAGG-CAAUGACU
..(((((((((..(((((((....))))))).......))--)).))))).((((((....)))))).((((((....)))))-)....... ( -37.90)
>consensus
CACUUGCACUUAACGCCUGCCUAGGCGGGUGGAAAAGGGGGCGUGGCGGGAGGGAGAUACUUGUCCUGCCCUCAUGCAUGUGGAUAAUGACU
(((.((((.....(((((((....))))))).....(((((((.((((((.........)))))).))))))).)))).))).......... (-31.25 = -32.25 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:41 2006