| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,291,224 – 2,291,355 |
| Length | 131 |
| Max. P | 0.827054 |
| Location | 2,291,224 – 2,291,315 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 89.38 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -14.89 |
| Energy contribution | -14.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2291224 91 - 27905053 UUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCCGCAUUUAUCACCAUACCCCA ..................................((.(((((......((((....))))......))))))).................. ( -17.00) >DroSec_CAF1 27491 91 - 1 UUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCCGGAUUCAUCACCUCACCCCA ..............(((..........(((....)))(((((......((((....))))......))))))))................. ( -19.40) >DroYak_CAF1 26392 83 - 1 UUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCUGUGGCGUCACCUCCCCAUCGC---AUUUAUCACCACC----- ........................((((((....)))((((.(((....))).)))).........))).---.............----- ( -11.00) >consensus UUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCCG_AUUUAUCACCACACCCCA ........................((((((....)))((((.(((....))).)))).........)))...................... (-14.89 = -14.67 + -0.22)
| Location | 2,291,244 – 2,291,355 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.58 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -19.83 |
| Energy contribution | -21.45 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2291244 111 - 27905053 UAACGUUUGCAGAGCUGUUUCGAAAUGUUUUGACAAAUGAUUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCC--------- ........((.(((..((((((((((((...((((((....)))))).)))))..........)))))))))).))(((((.(((....))).))))).............--------- ( -30.20) >DroSec_CAF1 27511 111 - 1 UAGCGUUUGCAGAGCUGUUUCGAAAUGUUUUGACAAAUGAUUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCC--------- ..(((...((.(((..((((((((((((...((((((....)))))).)))))..........)))))))))).))(((((.(((....))).))))).........))).--------- ( -33.10) >DroYak_CAF1 26405 110 - 1 CAGCGUUUGCAGAGCUGUUUCAAAAUGUGUUGACAAAUGAUUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCUGUGGCGUCACCUCCCCAUCGC---------- ..(((.(..(((((.((((..((((((((..((((((....)))))))))))))).............(((......))))))).)))))..))))..............---------- ( -25.20) >DroAna_CAF1 26009 117 - 1 CGCAGUUUGCAGAGCUGUUUCGAAAUGUUUUGACAAAUGAUUUUGUUUAUAUUUUCCUUUUCAUCGAAGCCUCCGAUGGCGACACUCUUGCGGC---CAUUCCCCAUUGCCACCAGUCAC .(((((..((((((.((((.((((((((...((((((....)))))).)))))))......(((((.......)))))).))))))).)))((.---......))))))).......... ( -25.70) >consensus CAGCGUUUGCAGAGCUGUUUCGAAAUGUUUUGACAAAUGAUUUUGUUUAUAUUUUCCAUUUCAUCGAAGCCUCCGCUGGCGACACUUCGGUGGCGCCACCUCCCCAUCGCC_________ ........((.(((..((((((((((((...((((((....)))))).)))))..........)))))))))).))(((((.(((....))).)))))...................... (-19.83 = -21.45 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:36 2006