Locus 6179

Sequence ID 3R_DroMel_CAF1
Location 16,175,115 – 16,175,223
Length 108
Max. P 0.857018
window10070

overview

Window 0

Location 16,175,115 – 16,175,223
Length 108
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 88.41
Mean single sequence MFE -28.65
Consensus MFE -21.89
Energy contribution -23.45
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.81
SVM RNA-class probability 0.857018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16175115 108 + 27905053
CUUUGCCGCUU--CCCCCUUCCCGCUGCCUAAAGACUUGGGCUCCGAAGGCUGGGCUCUUUAACUGGUCAUUAAUUACAAAUUAUAUGCCACUCCUGGCGGCAGGAACAA
.(((((((((.--((((((((.....((((((....))))))...)))))..))).........(((.(((((((.....)))).)))))).....)))))))))..... ( -32.80)
>DroSec_CAF1 4379 110 + 1
CUUUGCCGCUUUCCCCCCUUCCCGCUGCCUAAAGACUUGGGCUCCGAAGGCUGGGCUCUUUAACUGGUCAUUAAUUACAAAUUAUAUGCCACUCCUGGCGGCAGGAACAA
.(((((((((..(((.(((((.....((((((....))))))...)))))..))).........(((.(((((((.....)))).)))))).....)))))))))..... ( -33.40)
>DroEre_CAF1 3198 109 + 1
CACCUCCUCCAA-CCCCCCUCCCCCUGCCCAAGGACUUGGGCUCCGAAGGCUGUUCUCUUUAACUGGUCAUUAAUUACAAAUUAUAUGCCACUCCUGGCGGCAGGAACAA
....((((((..-.............((((((....))))))......(((((((......))).))))..................((((....)))))).)))).... ( -25.30)
>DroYak_CAF1 5287 106 + 1
CACUUCCUU----UUCCCCUCCCUCUGCCCAAAGACUUGGGCUUCGAAGGCUGUUCUCUUUAACUGGUCAUUAAUUACAAAUUAUAUGCCACUCCUGGCGCCAGGAACAA
.........----.......((.((.((((((....))))))...)).)).(((((.......(((((...((((.....))))...((((....)))))))))))))). ( -23.11)
>consensus
CACUGCCGCUU__CCCCCCUCCCGCUGCCCAAAGACUUGGGCUCCGAAGGCUGGGCUCUUUAACUGGUCAUUAAUUACAAAUUAUAUGCCACUCCUGGCGGCAGGAACAA
...................(((.((((((.(((((.((.((((.....)))).)).)))))...(((.(((((((.....)))).)))))).....)))))).))).... (-21.89 = -23.45 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:40 2006