Locus 6177

Sequence ID 3R_DroMel_CAF1
Location 16,172,392 – 16,172,484
Length 92
Max. P 0.948630
window10067

overview

Window 7

Location 16,172,392 – 16,172,484
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 78.91
Mean single sequence MFE -25.51
Consensus MFE -15.73
Energy contribution -16.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.62
SVM decision value 1.38
SVM RNA-class probability 0.948630
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16172392 92 - 27905053
UGAGCGAUAAAUUUACCGGCGUCUUGGAAAAAUUGUCGCUGAAAAGCGGGAGCUGGGAGAUGAUGGUGGUGUGGCGCGGGCGGGGUCGUAUC
...(((((....(..((.(((((.....(..((..((.((....(((....))).)).))..))..).....))))).))..).)))))... ( -27.30)
>DroEre_CAF1 426 72 - 1
UGAGCGAUAAAUUUGCCGGCGUCUUGGAAAAAUUGUCGCUGAAAAGCGGCACUGGAGAGAUGGUGG--------------------CGUAUC
.....((((....(((((.((((((........(((((((....))))))).....)))))).)))--------------------)))))) ( -26.32)
>DroYak_CAF1 1631 72 - 1
UGAGCGAUAAAUUUGCCGGCGUCUUGGAAAAAUUGUCGCUGAAAAGCGGGAGCUGAGAGAUGGUGG--------------------CGUAUC
.....((((....(((((.((((((.......((.(((((....))))).))....)))))).)))--------------------)))))) ( -22.90)
>consensus
UGAGCGAUAAAUUUGCCGGCGUCUUGGAAAAAUUGUCGCUGAAAAGCGGGAGCUGAGAGAUGGUGG____________________CGUAUC
...............(((.((((((.......((.(((((....))))).))....)))))).))).......................... (-15.73 = -16.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006