Locus 6176

Sequence ID 3R_DroMel_CAF1
Location 16,170,784 – 16,170,884
Length 100
Max. P 0.876646
window10066

overview

Window 6

Location 16,170,784 – 16,170,884
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.28
Mean single sequence MFE -21.12
Consensus MFE -4.94
Energy contribution -7.18
Covariance contribution 2.24
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.23
SVM decision value 0.90
SVM RNA-class probability 0.876646
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16170784 100 + 27905053
--------------------CUCGUUUCAAAGCGACAAACAAGCCCAUCUAGCAAAAAGCCAGCAGUGGCAACUACCACCACUGCAUUCACAGACAGUGGUAACAACAAGUUGGCCAACA
--------------------.(((((....))))).......((.......)).....((((((.(((....).)).((((((((.......).)))))))........))))))..... ( -23.80)
>DroPse_CAF1 232 110 + 1
UCUACUCCGCUCGUUAACACCUCGUUUCAAAGCGACAAACAAACAAACCAAGAAACAAAC-A------GCAACUUUA---GCUACAGUCGGAGACAACGACAACAACAAGUUCACCAACA
....(((((((.(((......(((((....)))))......)))................-(------((.......---)))..)).)))))........................... ( -14.00)
>DroSec_CAF1 1 100 + 1
--------------------CUCGUUUCAAAGCGACAAACAAGCACAUCUAGCAAAAAGCCAGCAGUGGCAACUACCACUACUGCAUUCACGGACAGUGGUAACAACAAGUUGGCCAACA
--------------------.(((((....))))).......((.......)).....((((((...(....)(((((((.(((......)))..))))))).......))))))..... ( -24.10)
>DroPer_CAF1 229 110 + 1
UCUACUCCGCUCGUUAACACCUCGUUUCAAAGCGACAAACAAACAAACCAAGAAACAAAC-A------GCAACUUUA---GCUACAGUCGGAGACAACGACAACAACAAGUUCACCAACA
....(((((((.(((......(((((....)))))......)))................-(------((.......---)))..)).)))))........................... ( -14.00)
>DroYak_CAF1 50 120 + 1
CGUGUUCGGCUCGUUAACAGCUAGUUUCAAAGCGACAAACAAGCACAUCAAGCAAAAAGCCAGCAGUGGCUACUACCACUACUGCAUUCACAGACAGUGGUAACAACAAGUUGGCCAACA
..((((.((((.(((....(((........)))....)))..((.......))....)))))))).((((...(((((((.(((......)))..))))))).(((....)))))))... ( -29.70)
>consensus
__U__UC_GCUCGUUAACA_CUCGUUUCAAAGCGACAAACAAGCACAUCAAGCAAAAAGCCAGCAGUGGCAACUACCAC_ACUGCAUUCACAGACAGUGGUAACAACAAGUUGGCCAACA
.....................(((((....))))).......................((((((.((((......))))........((((.....)))).........))))))..... ( -4.94 =  -7.18 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:36 2006