| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,170,538 – 16,170,639 |
| Length | 101 |
| Max. P | 0.597202 |
| Location | 16,170,538 – 16,170,639 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.13 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -16.72 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16170538 101 + 27905053 CGGCAAACAUUUUUAAUGAUGCC-CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGUAGCUCACACUCGCCACUCGCCACUUGCAAGCA--------- (((((((......((((((..((-(..............))).......)))))).......)))))))..(((..((...((.....))....))..))).--------- ( -18.76) >DroSec_CAF1 5696 94 + 1 CGGCAAACAUUUUUAAUGAUGCC-CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGUAGCUCACACUCGCCACUCG-------CAAGCA--------- .(((...((((......))))..-..........(((((((.((((((...........)))))).)))))))........)))...(.-------...)..--------- ( -18.20) >DroSim_CAF1 5711 101 + 1 CGGCAAACAUUUUUAAUGAUGCC-CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGUAGCUCACACUCGCCACUCGCCACUAGCAAGCA--------- .(((...((((......))))..-..........(((((((.((((((...........)))))).)))))))........)))....((.....)).....--------- ( -18.90) >DroEre_CAF1 5416 91 + 1 CGGCA-ACAUUUUUAAUGAUGCC-CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGUAGCUCACG--G-------GCCGCUCGCAUGCA--------- .((((-.(((.....))).))))-..........(((((((.((((((...........)))))).))(..(((....--)-------))..)..))).)).--------- ( -20.70) >DroYak_CAF1 2495 91 + 1 CGGCA-ACAUUUUUAAUGAUGCC-CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUCCCGUAGCUCACG--G-------GCCGCUCGCUUGCA--------- .((((-.(((.....))).))))-..........((((((((((((((...........))))))))))))))...((--(-------((.....)))))..--------- ( -26.20) >DroAna_CAF1 5051 99 + 1 UGGCA-ACAUUUUUAAUGAUGCCCCUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGCAGCACA----G-------GCCACUUAUACGCAUACAUGGGA .((((-.(((.....))).))))...........(((((((.((((((...........)))))).)))))))...----.-------.(((..(((....)))..))).. ( -24.80) >consensus CGGCA_ACAUUUUUAAUGAUGCC_CUUAAUUAUCGCUGUGGGAAAUUAUUCAUUAUCACUAAUUUGCCGUAGCUCACA__C_______GCCACUCGCAAGCA_________ .(((...((((......)))).............(((((((.((((((...........)))))).)))))))...............))).................... (-16.72 = -16.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:35 2006