Locus 6174

Sequence ID 3R_DroMel_CAF1
Location 16,169,666 – 16,169,766
Length 100
Max. P 0.543123
window10064

overview

Window 4

Location 16,169,666 – 16,169,766
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.69
Mean single sequence MFE -34.80
Consensus MFE -26.15
Energy contribution -28.02
Covariance contribution 1.87
Combinations/Pair 1.21
Mean z-score -1.86
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.543123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16169666 100 - 27905053
AGUCAUGCGGGGUUUUUGUGGCUUUCGCGUGUCGUGCAGCAUGCGAUUUUGAUGUUUGCUGGAACACGUGCGUUGCAAACCCAAGGAUGAAGUGAUUCCC
..((((.(.(((((..((..((...(((((((..(.(((((.(((.......))).))))).)))))))).))..)))))))..).)))).......... ( -32.90)
>DroSec_CAF1 4824 100 - 1
AGUCAUGCGGGGUUUUUGUGGCUUUCGCGUGUCGUGCAGAAUGCGAUUUUGAUGUUUGCAGCGACACGUGCGCUGCAAACCCAAGGAUGAAGUGAUUCCC
..((((.(.(((((..((..((...(((((((((((((((...((....))...)))))).))))))))).))..)))))))..).)))).......... ( -39.60)
>DroSim_CAF1 4832 100 - 1
AGUCAUGCGGGGUUUUUGUGGCUUUCGCGUGUCGUGCAGCAUGCGAUUUUGAUGUUUGCUGCGACACGUGCGCUGCAAACCCAAGGAUGAAGUGAUUCCC
..((((.(.(((((..((..((...((((((((..((((((.(((.......))).)))))))))))))).))..)))))))..).)))).......... ( -40.10)
>DroEre_CAF1 4605 87 - 1
AAUCAUGUGGGGUUUUUGCGGCUUUCGCGCGUCGUGCACCAUGCGAUUUUGAUGUUUGCUGCGACACGUGCGCUGCA-ACCCAAGGAU------------
.(((...((((....(((((((...((((.((((((((.(((.((....)))))..))).))))).)))).))))))-)))))..)))------------ ( -31.90)
>DroYak_CAF1 1618 99 - 1
UGGCAUACGGGGUUUUUGUGGGUUUCGCGUGUCGUGCAGCAUGCGAUUUUGAUGUUUGCUGCGACACGUGCGCUGCA-ACCCAAGGAUGAAGUGAUUCCC
...(((...((((...((..(....((((((((..((((((.(((.......))).))))))))))))))..)..))-))))....)))........... ( -33.00)
>DroAna_CAF1 4391 97 - 1
AGUUAUGUGUGGGUUUUGUGGCUUCUGCGUGUCCUGCAGCAUGCGAUUUUGAUGUUUGCUGCGACACGUGCUCAUGGACGCUAUGGAUGAAGUGGUU---
..((((.(((((((.(..((((....(((((((..((((((.(((.......))).))))))))))))))).))..))).))))).)))).......--- ( -31.30)
>consensus
AGUCAUGCGGGGUUUUUGUGGCUUUCGCGUGUCGUGCAGCAUGCGAUUUUGAUGUUUGCUGCGACACGUGCGCUGCAAACCCAAGGAUGAAGUGAUUCCC
..((((.(.(((((..((((((...((((((((..((((((.(((.......))).)))))))))))))).)))))))))))..).)))).......... (-26.15 = -28.02 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:34 2006