Locus 6172

Sequence ID 3R_DroMel_CAF1
Location 16,163,935 – 16,164,034
Length 99
Max. P 0.699013
window10061

overview

Window 1

Location 16,163,935 – 16,164,034
Length 99
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -33.20
Consensus MFE -21.54
Energy contribution -21.30
Covariance contribution -0.24
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.65
SVM decision value 0.35
SVM RNA-class probability 0.699013
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16163935 99 - 27905053
CACAGAUCCACAGUCGACAGAAACUGAGCCGGGACCAGGCCAAGUGUCAAUUGAAACAAUUCAAUUGGUCUGCCAGC-----AAAUU----CUGUUGGUCGUGAGGGG-
......(((((..(((((((((.(((.((..(((((.(((.....)))(((((((....))))))))))))))))).-----...))----)))))))..))).))..- ( -31.30)
>DroSec_CAF1 33509 99 - 1
CACAGAUCCACAGUCGACAGAAAUUGAGCCGGGACCAGGCCAAGUGUCAAUUGAAACAAUUCAAUUGGUCUGCCAGC-----AAAUU----CUGUUGGCCGUGAGGGG-
......(((((.((((((((((.(((.((..(((((.(((.....)))(((((((....))))))))))))))...)-----)).))----)))))))).))).))..- ( -33.40)
>DroSim_CAF1 35673 99 - 1
CACAGAUCCACAGUCGACAGAAACUGAGCCGGGACCAGGCCAAGUGUCAAUUGAAACAAUUCAAUUGGUCUGCCAGC-----AAAUU----CUGUUGGCCGUGAGGGG-
......(((((.((((((((((.(((.((..(((((.(((.....)))(((((((....))))))))))))))))).-----...))----)))))))).))).))..- ( -33.40)
>DroEre_CAF1 33406 95 - 1
CACAGA----CGGUCGACAGAAACUGAGCCGGGACCAGGCCAAGUGUCAAUUGAAACAAUUCAAUUGGUCUGCCAGC-----AAAUU----CUGUUGGCCGUGAGGGG-
.....(----((((((((((((.(((.((..(((((.(((.....)))(((((((....))))))))))))))))).-----...))----)))))))))))......- ( -36.40)
>DroAna_CAF1 30960 105 - 1
CAAAAA----CAGGCAACGGAAACUGAGCCGAGACUGGGCCAAGUGUCAAUUGAAACAAUUCAAUUGCUCUGCCAACCGGACAAGCGCCAAGUGGUGGCCGAGGGGACU
......----..(((...(....)...)))....((.((((.((.(.((((((((....))))))))).))((((...((.(....)))...)))))))).))...... ( -31.50)
>consensus
CACAGAUCCACAGUCGACAGAAACUGAGCCGGGACCAGGCCAAGUGUCAAUUGAAACAAUUCAAUUGGUCUGCCAGC_____AAAUU____CUGUUGGCCGUGAGGGG_
..............((((((..(((..(((.......)))..)))..((((((((....))))))))........................)))))).((....))... (-21.54 = -21.30 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:31 2006